Locus 669

Sequence ID 3L_DroMel_CAF1
Location 1,986,068 – 1,986,160
Length 92
Max. P 0.996472
window1022

overview

Window 2

Location 1,986,068 – 1,986,160
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 92.90
Mean single sequence MFE -29.08
Consensus MFE -26.26
Energy contribution -26.82
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.97
Structure conservation index 0.90
SVM decision value 2.70
SVM RNA-class probability 0.996472
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1986068 92 + 23771897
UGCCAUUUUCGUGUUGACAAAUUCGCCGGCGGACAAGUUGGCUUUUUGUCUCCGCUUGUGGCACUUGCCACUACCGUAUAGUUUAGUUUGCC
.((.......(((..((((((...((((((......))))))..))))))..)))..(((((....)))))..................)). ( -28.20)
>DroSec_CAF1 37043 89 + 1
UGCCAUUUUCGUGUUGUCAAAUUCGCCGGCGGACAAGUUGGCUUUUUGUCUCCGCGUGUGGCACUUGCCA---CCAUAUAGUUUAGUUUGCC
((((((...((((..(.((((...((((((......))))))..)))).)..)))).)))))).......---................... ( -26.70)
>DroSim_CAF1 51512 89 + 1
UGCCAUUUUCGUGUUGACAAAUUCGCCGGCGGACAAGUUGGCUUUUUGUCUCCGCGUGUGGCACUUGCCA---CCGUAUAGUUUAGUUUGCC
((((((...((((..((((((...((((((......))))))..))))))..)))).)))))).......---................... ( -30.60)
>DroEre_CAF1 42921 89 + 1
AGCCAUUUUCGUGUUGACAAAUUCGCCGGCGGACAAGUUGGCUUUUUGUCUCCGCGUGUGGCUGUUGCCG---CCGUAUAGUAUAGUUUGCC
((((((...((((..((((((...((((((......))))))..))))))..)))).)))))).......---................... ( -30.80)
>DroYak_CAF1 37962 89 + 1
UGCCAUUUUCGUGGUGACAAAUUCGCCGGCGGACAAGUUGGCUUUUUGUCUCCGCGUGUGUCUGUUGCCG---CCGUACAGUAUAGUUUGCC
.((......(((((.((((((...((((((......))))))..)))))).)))))((((.((((.((..---..))))))))))....)). ( -29.10)
>consensus
UGCCAUUUUCGUGUUGACAAAUUCGCCGGCGGACAAGUUGGCUUUUUGUCUCCGCGUGUGGCACUUGCCA___CCGUAUAGUUUAGUUUGCC
((((((...((((..((((((...((((((......))))))..))))))..)))).))))))............................. (-26.26 = -26.82 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:05 2006