| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,785,344 – 17,785,457 |
| Length | 113 |
| Max. P | 0.580490 |
| Location | 17,785,344 – 17,785,457 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 82.82 |
| Mean single sequence MFE | -23.92 |
| Consensus MFE | -18.00 |
| Energy contribution | -17.78 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17785344 113 + 23771897 ACACCACAGCCACUUACAGUCCAUUGAACAGCAGUGCAAAAUUAAUACAUGACUCAAUUUAGCCAUGUGAAUAAGGUUGUGUAAAAUUAAAUUGUGCAAUUGGAGCAUAGCAA ....(((((((..........(((((.....))))).........((((((.((......)).)))))).....)))))))..........((((((.......))))))... ( -23.40) >DroSec_CAF1 10572 113 + 1 AUACCACAACCACUUACAGUCCAUUGACCAGCAGUGCAAAAUGAAGACAUGACUCAAUUUAGCCAUGUGAAUAAGGUUGUGUAUGAUUAAAUUGUGCAAUUGGAGCAUAGCAA ((((.((((((.(((.((...(((((.....))))).....)))))(((((.((......)).)))))......)))))))))).......((((((.......))))))... ( -24.20) >DroSim_CAF1 9259 113 + 1 AUACCACAACCACUUACAGUCCAUUGACCAGCAGUGCAAAAUGAAGACAUGACUCAAUUUAGCCAUGUGAAUAAGGUUGUGUAUGAUUAAAUUGUGCAAUUGGAGCAUAGCAA ((((.((((((.(((.((...(((((.....))))).....)))))(((((.((......)).)))))......)))))))))).......((((((.......))))))... ( -24.20) >DroEre_CAF1 10597 110 + 1 A---CGCAACCACUUACAGUCCAUUGACCAGCAGUGCAAAAUGAUGACAUGACUCAAUUUGGCCAUGUGAAUAAGGUUGUGUAAAAUUAAAUUGUGCAACUGGAGCAUUGCAA .---..............(((....)))..(((((((.......(.(((((.((......)).))))).)....(((((..(((.......)))..)))))...))))))).. ( -25.40) >DroYak_CAF1 10732 110 + 1 A---CACAACCACCUACAGUCCAUUGACCAGCAGUGCAAAAUGAUGACAUGACUCAAUUUAGCCAUGUGAAUAAGGUUGUGUACAAUUAAAUUGUGCAACUGGAUCAUAGCAA .---..............((....(((((((..(..(((..((((.(((..(((..(((((......)))))..)))..)))...))))..)))..)..)))).)))..)).. ( -24.50) >DroAna_CAF1 11163 110 + 1 U--UUUCA-GAACUCACUAUCUUUUGACCAACAAUGUAAUAUCAAGAGAUGACUUAACUUGGCCAUUUGCAAAAUAUUGUAAAAAAUCAAGUUGUGCAACUCCUGCAUUUUGU .--...((-(((.....((((((((((..............))))))))))...((((((((...(((((((....)))))))...))))))))((((.....))))))))). ( -21.84) >consensus A__CCACAACCACUUACAGUCCAUUGACCAGCAGUGCAAAAUGAAGACAUGACUCAAUUUAGCCAUGUGAAUAAGGUUGUGUAAAAUUAAAUUGUGCAACUGGAGCAUAGCAA ....(((((((..........(((((.....)))))..........(((((.((......)).)))))......)))))))..........((((((.......))))))... (-18.00 = -17.78 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:32 2006