Locus 6683

Sequence ID 3L_DroMel_CAF1
Location 17,782,344 – 17,782,456
Length 112
Max. P 0.710875
window10877

overview

Window 7

Location 17,782,344 – 17,782,456
Length 112
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 79.36
Mean single sequence MFE -30.00
Consensus MFE -20.26
Energy contribution -19.63
Covariance contribution -0.63
Combinations/Pair 1.41
Mean z-score -1.45
Structure conservation index 0.68
SVM decision value 0.38
SVM RNA-class probability 0.710875
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17782344 112 - 23771897
UGUUGUCCUGAGAGGUAAGACAUUAUUGCAUACAUAA----AACAUUUAAGUUCUAGCUAUUUCUUAGUGGCAACGGUUGUCACCCAACGUCCACUCACCUUGUCGGAUGACGAAC
.((((((((((((((((.(.((....))).....((.----(((......))).))..)))))))))).))))))..((((((.((.(((...........))).)).)))))).. ( -26.50)
>DroSec_CAF1 7584 113 - 1
UGUUGUCCUGAGGGGUAAGACUUUGUUGUAUAUAUAAU---AACAUUAAAGUUUGAGCUAUCCUUUAGUGGCAACGGUGGUCACCUAACGUCCACUCACCUUGUCGGAUGACGAAC
.((((((((((((((((((((((((.(((.........---.))).))))))))....)))))))))).))))))(((....)))...(((((((.......)).)))))...... ( -35.30)
>DroSim_CAF1 6278 113 - 1
UGUUGUCCUGAGGGGUAAGACUUUGUUGUAUAUAUAAU---AACAUUAAAGUUUGAGCUAUCCUUUAGUGGCAACGGUGGUCACCCAACGUCCACUCACCUUGUCGGAUGACGAAC
.((((((((((((((((((((((((.(((.........---.))).))))))))....)))))))))).))))))(((((.(.......).)))))....(((((....))))).. ( -35.10)
>DroEre_CAF1 7543 113 - 1
UGUUGUCCUGAGGGGUAAGGGUUUAUUUUAUUUAUUAA---AGUUCUUUAGCUUGAGCUAACUCUUAGUGGCAACGGUGGUCACCCAACGUUCACUCACCUUGUCGGAUGAUGAAC
.(((((((((((((.....((...((((((.....)))---))).))(((((....)))))))))))).))))))(((....)))....(((((.(((((.....)).)))))))) ( -31.80)
>DroYak_CAF1 7705 113 - 1
CGUUGUCCUGAGGGGUAAGGCAUUAUUUUAUAUAUGAA---AAUAUUUAAGCUCAAGCUAUUUGUUAGUGGCAACGGUGGUCACCCAACGUUCACUCACCUUGUCGGAUAAUGAAC
((((((((...(((((.((.......((((.((((...---.)))).)))).....((((((....))))))((((.(((....))).))))..)).)))))...))))))))... ( -29.60)
>DroAna_CAF1 8146 116 - 1
UGUAGUUUUAAGGGGUAAGACUUUUUCUUAGAUAAGAUCUAAACCUCUAACAAUAAUUAAUUUUCUAGUGGCAACGGUGGUUACCCAAAGACCUCUCACCUGGUCAGAUGAUAUGC
............((((((.........((((((...))))))......................(((.((....)).)))))))))...((((........))))........... ( -21.70)
>consensus
UGUUGUCCUGAGGGGUAAGACUUUAUUGUAUAUAUAAU___AACAUUUAAGUUUGAGCUAUCUUUUAGUGGCAACGGUGGUCACCCAACGUCCACUCACCUUGUCGGAUGACGAAC
((((((((...(((((.................................(((....))).......(((((..(((.(((....))).)))))))).)))))...))))))))... (-20.26 = -19.63 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:31 2006