Locus 6682

Sequence ID 3L_DroMel_CAF1
Location 17,774,706 – 17,774,808
Length 102
Max. P 0.601196
window10876

overview

Window 6

Location 17,774,706 – 17,774,808
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.84
Mean single sequence MFE -37.48
Consensus MFE -27.06
Energy contribution -26.98
Covariance contribution -0.08
Combinations/Pair 1.36
Mean z-score -1.44
Structure conservation index 0.72
SVM decision value 0.14
SVM RNA-class probability 0.601196
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17774706 102 + 23771897
CCAAACAAGGCUUCUGGCCGCGGCCGGAAGACCACAGAUGGCGUUGUGCACGGGAAUGGCCAGAAAUCCGGCCAGAGCAAUGCCAUAGGAGUCCGACUGUAC
........((((((((((....)))))))).))((((((((((((((.........(((((.(....).)))))..)))))))))).((...))..)))).. ( -43.30)
>DroGri_CAF1 1 84 + 1
------------------CGCAGCUGGCAAUCCACAUAUCGCAUUGUGCACGGGUAUGGCCAGGAAUCCGGCGAGGGCGAUGCCGUAGGAAUCCGAUUGGAC
------------------..(((.(((...(((((.((((((....(((.(((((..........))))))))...))))))..)).)))..))).)))... ( -23.90)
>DroSec_CAF1 1 96 + 1
------AAGGCUUCUGGUCGCGGCCGGAAGACCACAGAUGGCGUUGUGCACGGGAAUGGCCAGGAAUCCGGCCAGAGCAAUGCCAUAGGAGUCCGACUGGAC
------..((((((((((....)))))))).)).(..((((((((((.........(((((.((...)))))))..))))))))))..).((((....)))) ( -42.50)
>DroEre_CAF1 1 96 + 1
------AAGGCUCCUGGCCGCGGCCGGGAGACCACAGAUGGCGUUGUGCACGGGAAUGGCCAGGAAUCCGGCCAGGGCAAUGCCAUAGGAGUCCGACUGAAC
------..((((((((((....)))))))).)).(((((((((((((.(.......(((((.((...)))))))).)))))))))).((...))..)))... ( -45.41)
>DroYak_CAF1 1 96 + 1
------GAGGCUCCUGGCCGCGGCCGGAAGACCACAGAUCGCGUUGUGCACGGGAAUGGCCAGGAAUCCGGCCAGGGCAAUGCCAUAGGAGUCCGACUGAAC
------(.(((((((((((..((((((....)).....((.(((.....))).))..)))).((...))))))..(((...)))..))))))))........ ( -35.90)
>DroAna_CAF1 1 96 + 1
------AACGCCUCUCGUGGCCGCCGGCAGACCACAGAUGGCAUUGUGGACGGGAAUCGCCAGGAAUCCGGCCAAUGCGAUGCCAUAGGAAUCUGAUUGCAC
------...(((......))).((...((((((....((((((((((((.(.(((.((.....)).))).)))...)))))))))).))..))))...)).. ( -33.90)
>consensus
______AAGGCUUCUGGCCGCGGCCGGAAGACCACAGAUGGCGUUGUGCACGGGAAUGGCCAGGAAUCCGGCCAGGGCAAUGCCAUAGGAGUCCGACUGAAC
........(((.....))).(((.((((...((....((((((((((.(.......(((((........)))))).)))))))))).))..)))).)))... (-27.06 = -26.98 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:29 2006