Locus 668

Sequence ID 3L_DroMel_CAF1
Location 1,985,231 – 1,985,328
Length 97
Max. P 0.763281
window1021

overview

Window 1

Location 1,985,231 – 1,985,328
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 77.53
Mean single sequence MFE -24.97
Consensus MFE -17.05
Energy contribution -19.30
Covariance contribution 2.25
Combinations/Pair 1.14
Mean z-score -1.35
Structure conservation index 0.68
SVM decision value 0.51
SVM RNA-class probability 0.763281
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1985231 97 - 23771897
UAUCGAGCCUGGAAAAAGUUUUUCGUUUUUCACUGCGGUUUCCUCAGAUAGGGAAAGCUGUGUUCCAUAUAAAUUGUUGUGGCUCUGCCGCUUCUUG
....((((((((((..((((((((.(......(((.((...)).)))..).))))))))...))))).((((....)))))))))............ ( -23.40)
>DroSec_CAF1 36181 89 - 1
UAUCGAGCCUGGAAAAAGUUUUCCGUUUUUCACUGCGGUUUCCUCAGAUAGGGGAAGCUGUGUUCCAUAUAAAUUGUUGUGGCUCUGCU--------
....(((((.(((((....)))))..........(((((((((((.....)))))))))))...................)))))....-------- ( -28.80)
>DroSim_CAF1 50655 97 - 1
UAUCGAGCCUGGAAAAAGUUUUCCGUUUUUCACUGCGGUUUCCUCAGAUAGGGGAAGCUGUGUUCCAUAUAAAUUGUUGUGGCUCUGCCGCUUCUCG
....(((((.(((((....)))))..........(((((((((((.....)))))))))))...................)))))............ ( -28.80)
>DroEre_CAF1 42063 97 - 1
UAUCGACCCUUGAAAAACUUUUCCUUUUUUCACUGCGGUUUCCUCAGAUAGGGGAAGCUGUGUCCUAUAUAAAUUGUUGUGGCUCUGCUGGUUCUUG
....((((..(((((((........)))))))..(((((((((((.....)))))))))))(..(((((........)))))..)....)))).... ( -23.00)
>DroYak_CAF1 37081 97 - 1
UAUCGAGCCUUGAAAAACUUUUUCGUUUUUCGCUGCGGUCUCCUCAGAUAGGGGAAGCUGUGUCCUAUAUAAAUUGUUGUGCCUCUGCCGGUUCUUG
....(((((..(((((((......)))))))((.((((..(((((.....)))))..))))(..(.(((.....))).)..)....)).)))))... ( -26.50)
>DroMoj_CAF1 39797 80 - 1
UAUCGAGCCGUGAAAAACUUU--------UCUUUGCGGCC-UGCCGGAUU----GCGUUGAGUACGAUA----UUUUUAUUGCUUCUCUCGCUGUUG
......((((..((.......--------..))..)))).-.....(((.----(((..(((..(((((----....)))))...))).))).))). ( -19.30)
>consensus
UAUCGAGCCUGGAAAAACUUUUCCGUUUUUCACUGCGGUUUCCUCAGAUAGGGGAAGCUGUGUUCCAUAUAAAUUGUUGUGGCUCUGCCGGUUCUUG
....(((((..((((((........))))))...(((((((((((.....)))))))))))...................)))))............ (-17.05 = -19.30 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:04 2006