| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,753,854 – 17,753,973 |
| Length | 119 |
| Max. P | 0.601882 |
| Location | 17,753,854 – 17,753,973 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.55 |
| Mean single sequence MFE | -39.70 |
| Consensus MFE | -28.08 |
| Energy contribution | -29.20 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17753854 119 - 23771897 UAAUGUUAGGAUUCUGCCCCGAAAUGGUUUUAGUCCCUGUUU-CGGGGUCCUUACUCGACACACAGGGCCCAAUCGACUGCCAUCUGCGGUUAACCGCUUAGCGAUGCCCAUCAUCGGGA .......(((.....((((((((((((.........))))))-)))))))))..(((((......((((...((((.(((......((((....)))).)))))))))))....))))). ( -38.90) >DroSim_CAF1 1962 119 - 1 UAAUGUUAGGAUUCUGCCCCGAAAUGGGUUUAGUUCCUGUUU-CGGGGUCCUUGCUCGCUACACAGGGCACAAUCGACUGCCAUCUGCGGUUAACCGCUUAGCGUUGCCCAUCAUCGGGA ....((.(((.....(((((((((((((.......)))))))-))))))))).)).(((((.....((((........))))....((((....)))).)))))...(((......))). ( -45.20) >DroEre_CAF1 2571 118 - 1 UAAUGCUACACUUCUGCCCCGAAAUGGGUCGAGUCCUGGUUUCUGGCGUCCUCAAACG--ACACAGGGCACAAUCGACUGCCAUCUGCGGUUAACCGCUUAGCGAUGCCCAUCAUCGGGA .................(((((.((((((...((((((((.....))(((.......)--)).))))))...((((.(((......((((....)))).)))))))))))))..))))). ( -37.90) >DroYak_CAF1 19112 117 - 1 UAAUGUUACAAUUGUGCCCCAAAAUGGGUCGAGUUCCGGUUU-UGGGGUCCUUACUCG--ACACAGGACAGAAUCGACUGCCAUCUGCGGUUAACCGCUUAGCGAUGCCCAUCAUCGGAA ...((((......(..(((((((((.((.......)).))))-)))))..)......)--)))..((.(((......)))))....((((....))))....(((((.....)))))... ( -36.80) >consensus UAAUGUUACAAUUCUGCCCCGAAAUGGGUCGAGUCCCGGUUU_CGGGGUCCUUACUCG__ACACAGGGCACAAUCGACUGCCAUCUGCGGUUAACCGCUUAGCGAUGCCCAUCAUCGGGA .................(((((.((((((...(.((((((...((((.......))))....)))))))...((((.(((......((((....)))).)))))))))))))..))))). (-28.08 = -29.20 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:19 2006