| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,752,737 – 17,752,836 |
| Length | 99 |
| Max. P | 0.937497 |
| Location | 17,752,737 – 17,752,836 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.08 |
| Mean single sequence MFE | -11.76 |
| Consensus MFE | -7.66 |
| Energy contribution | -8.00 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17752737 99 + 23771897 ---A-------CUCCCUU-UU-UUUAUUCCAUUGCGUUUUUCAAUGAAAUUCUUAUCUUUUUCAUUUUCAUUCAACUUUGACCCGAUGAUUUACAUAC----AUCUGUAUGCUUA ---.-------.......-..-.......(((((.(((.((.(((((((................))))))).))....))).))))).....(((((----....))))).... ( -11.69) >DroSim_CAF1 869 110 + 1 CACACUGUAUUUUCCCUU-UUUUGUAUUCCCUUGCGUUUUUCAAUGAAAUCCUUAUCUUUUUCAUUUUCAUUCAACUUUGACCCGAUGAUUUACAUAU----AUAUGUAUGCUUA .(((.(((((........-....(((......)))((...(((((((((..........))))))..(((........))).....)))...))..))----))))))....... ( -7.80) >DroEre_CAF1 1504 108 + 1 CACA-------CUUUAUUUUUUUAAACUCCCGUGCAAUUUUCAACGAGAUUCUUAUCAUUCUCAUUUUCAUUCAGCUUUGAAAAGAUGAUUUACAUAUGUACAUAUGUAUGCCCU ....-------..(((((((((((((((...((..........))((((..........))))..........)).)))))))))))))..(((((((....)))))))...... ( -15.80) >consensus CACA_______CUCCCUU_UUUUAUAUUCCCUUGCGUUUUUCAAUGAAAUUCUUAUCUUUUUCAUUUUCAUUCAACUUUGACCCGAUGAUUUACAUAU____AUAUGUAUGCUUA .................................(((....(((((((((..........))))))).(((........)))...)).....(((((((....))))))))))... ( -7.66 = -8.00 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:18 2006