Locus 6675

Sequence ID 3L_DroMel_CAF1
Location 17,749,082 – 17,749,202
Length 120
Max. P 0.991900
window10863

overview

Window 3

Location 17,749,082 – 17,749,202
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.06
Mean single sequence MFE -33.55
Consensus MFE -28.77
Energy contribution -29.02
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.79
Structure conservation index 0.86
SVM decision value 2.29
SVM RNA-class probability 0.991900
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17749082 120 + 23771897
UCCUAUGUGCUUGAGCAUGUGUGCGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCAUAAGGAAACGGAUGAAGAAGUUGCAGAAUAACUAAGCUGCAGCAGCUCAUACGACUUUCAUACA
(((((((((..((.((((((..((((......)).))....)))))).))..))))).))))..((.((((.(..(((((((..........)))))))..))))).))........... ( -36.80)
>DroPse_CAF1 28022 103 + 1
-----------------UGUGUGCGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCAUAAGGAAACGGAUGAAGAAGUUGCAGAAUAAGUAAGCUGCACCAGCUCAUACGAAUUUCAUAUA
-----------------.(((((.((((....((((((((....((((..(((.(((..(....)..)))..)))..)))).......)))))))).))).).)))))............ ( -30.90)
>DroPer_CAF1 27701 103 + 1
-----------------UGUGUGCGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCAUAAGGAAACGGAUGAAGAAGUUGCAGAAUAAGUAAGCUGCACCAGCUCAUACGAAUUUCAUAUA
-----------------.(((((.((((....((((((((....((((..(((.(((..(....)..)))..)))..)))).......)))))))).))).).)))))............ ( -30.90)
>DroYak_CAF1 14266 120 + 1
UCCUAUGUGCUCGAGCAUGUGUGCGUGGAAAAGCAGCUUUAGCAUGCACAUUCGCAUAAGGAAACGGAUGAAGAAGUUGCAGAAUAACUAAGCUGCAGCAGCUCAUACGACUUGCAUACA
.....((((((((.((..(((((((((..((((...))))..)))))))))..))....(....)..((((.(..(((((((..........)))))))..))))).)))...))))).. ( -35.60)
>consensus
_________________UGUGUGCGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCAUAAGGAAACGGAUGAAGAAGUUGCAGAAUAACUAAGCUGCACCAGCUCAUACGAAUUUCAUACA
.................((((((.((......((((((((....((((..(((.(((..(....)..)))..)))..)))).......))))))))....)).))))))........... (-28.77 = -29.02 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:17 2006