Locus 6674

Sequence ID 3L_DroMel_CAF1
Location 17,747,933 – 17,748,050
Length 117
Max. P 0.649351
window10862

overview

Window 2

Location 17,747,933 – 17,748,050
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 81.32
Mean single sequence MFE -23.82
Consensus MFE -16.69
Energy contribution -18.25
Covariance contribution 1.56
Combinations/Pair 1.07
Mean z-score -1.67
Structure conservation index 0.70
SVM decision value 0.24
SVM RNA-class probability 0.649351
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17747933 117 + 23771897
CUGCAGUUGCGUAAUUGUAAUUGCGCUUAUUGUGUGCAUGUUAGCCAAUAAUUAGCAUUGAAUUAAUUUUCAAACAGCAAACCAAUUAGCCGCA---CACCUUAUCCUCGACACUUGACC
..(((((((((....)))))))))(..((..((((((.((((((.......))))))(((((......)))))..................)))---)))..))..)............. ( -25.20)
>DroPse_CAF1 26830 102 + 1
CUUCUGUGGCAUAAUUAUAAUUGCGUUUAUUGUGAGCUUGUUAGCCAAUAAUUAGCAUUGAAUUAAUUUCCGAAUGGAAAACCAAUUAGCCGCA---CACCUCAA---------------
....((((((.(((((.....(((..((((((...(((....)))))))))...)))...))))).(((((....)))))........))))))---........--------------- ( -23.70)
>DroPer_CAF1 26533 102 + 1
CUUCUGUGGCAUAAUUAUAAUUGCGUUUAUUGUGAGCUUGUUAGCCAAUAAUUAGCAUUGAAUUAAUUUCCGAAUGGAAAACCAAUUAGCCGCA---CACCUCAA---------------
....((((((.(((((.....(((..((((((...(((....)))))))))...)))...))))).(((((....)))))........))))))---........--------------- ( -23.70)
>DroYak_CAF1 13068 120 + 1
CUGCAGUUGCGUAAUUGUAAUUGCGUUUAUUGUGUGCAUGUUAGCCAAUAAUUAGCAUUGAAUUAAUUUUCAAACAGCAAACCAAUUAGCCGCACCACACCUUAUCCUCGACUCCUGACC
..(((((((((....)))))))))......(((((((.((((((.......))))))(((((......)))))..................))).))))..................... ( -22.70)
>consensus
CUGCAGUGGCAUAAUUAUAAUUGCGUUUAUUGUGAGCAUGUUAGCCAAUAAUUAGCAUUGAAUUAAUUUCCAAACAGAAAACCAAUUAGCCGCA___CACCUCAA_______________
.....(((((.((((((...(((((((.(((((..((......))..))))).))).(((((......)))))...))))..)))))))))))........................... (-16.69 = -18.25 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:16 2006