Locus 6671

Sequence ID 3L_DroMel_CAF1
Location 17,744,886 – 17,744,996
Length 110
Max. P 0.741443
window10858

overview

Window 8

Location 17,744,886 – 17,744,996
Length 110
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 60.58
Mean single sequence MFE -46.80
Consensus MFE -19.25
Energy contribution -20.71
Covariance contribution 1.45
Combinations/Pair 1.22
Mean z-score -2.04
Structure conservation index 0.41
SVM decision value 0.45
SVM RNA-class probability 0.741443
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17744886 110 - 23771897
UGCCACAGCCACAUGCUCCGCGCUUGAGGCGCCUGGCUUGGC-----AAAAAGAACCGCAGUGGGGGCGCAACCCCCCGGGGCGGAUA-----GUGGGAGCUGGGCGUGGCAAUGGAGGC
((((((.(((.((.(((((.((((......(((......)))-----........((((..((((((......))))))..))))..)-----)))))))))))))))))))........ ( -56.10)
>DroPse_CAF1 24164 115 - 1
UGCAGCUGCCACAUGCUCAACGCUUAAGGCGGCAGGGCAGGCGUGCCUGAAAGGACCGCAGAAGAAGCAGAACG-----AGCAUCCAUCAGAAGGGGGGGACUCGAGUGGCAGCAAAGUG
....((((((((((((((...((((...(((((....((((....))))....).)))).....)))).....)-----)))))..........(((....)))..))))))))...... ( -48.10)
>DroYak_CAF1 9119 96 - 1
UGCCACAGCAAGAUGCACCGCGCUUGAGGCGUCUGGCCUGGC-----AAAAAGAACCGCAUAGGGGGCGUAACC-------------------GUGGGCGCUGGGCGUGGCAAGGGAGGG
((((((.((.((.(((.(((((......((((((..((((((-----..........)).))))))))))...)-------------------)))))))))..))))))))........ ( -36.20)
>consensus
UGCCACAGCCACAUGCUCCGCGCUUGAGGCGCCUGGCCUGGC_____AAAAAGAACCGCAGAGGGGGCGCAACC______G____________GUGGGAGCUGGGCGUGGCAACGGAGGG
((((((.(((....((.....))....)))((((((((.((..............))((.......))..............................))))))))))))))........ (-19.25 = -20.71 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:12 2006