Locus 6670

Sequence ID 3L_DroMel_CAF1
Location 17,743,869 – 17,743,979
Length 110
Max. P 0.572426
window10857

overview

Window 7

Location 17,743,869 – 17,743,979
Length 110
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.21
Mean single sequence MFE -31.27
Consensus MFE -22.80
Energy contribution -24.68
Covariance contribution 1.88
Combinations/Pair 1.06
Mean z-score -1.50
Structure conservation index 0.73
SVM decision value 0.08
SVM RNA-class probability 0.572426
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17743869 110 + 23771897
UUUUAAUGCGAGAUGAAAUUACUUUUUAUUGACGCCUGGCAAACACGAUUGACAAGCACUUACACGCUCGUUGAGUGUCAUUUUGCCACUUGCGGUGGCAAUGGCCGCCA----------
.......(((((((((((.....)))))).......(((((((.(((.(..((.(((........))).))..).)))...))))))))))))((((((....)))))).---------- ( -35.30)
>DroPse_CAF1 22999 120 + 1
UUUUAAUGUGGAAUGAAAUUACUUUUUAUUGGCGCCAGGCAAACACGAUUGACAUGCACUUACACGCUCGUUGAGUGUCAUUUUGCCACUUGCGGUGCCAUUGCCCGCAUCCGCAUCCCC
.....(((((((((((((.....))))))(((((((.((((((.(((.(..((..((........))..))..).)))...))))))......))))))).........))))))).... ( -32.90)
>DroPer_CAF1 22787 120 + 1
UUUUAAUGUGGAAUGAAAUUACUUUUUAUUGGCGCCAGGCAAACACGAUUGACAUGCACUUACACGCUCGUUGAGUGUCAUUUUGCCACUUGCGGUGCCAUUGCCCGCAUCCGCAUCCCC
.....(((((((((((((.....))))))(((((((.((((((.(((.(..((..((........))..))..).)))...))))))......))))))).........))))))).... ( -32.90)
>DroYak_CAF1 8190 101 + 1
UUUUAAUGCGAGAUGAAAUUACUUUUUAUUGACGCCUGGCAAACACGAUUGACAUGCACUUACACGCUCGUUGAGUGUCAUUUUGCCACUUGCGGUGGCAC-------------------
......(((..(((((((.....)))))))..(((((((((((.(((.(..((..((........))..))..).)))...))))))).....))))))).------------------- ( -24.00)
>consensus
UUUUAAUGCGAAAUGAAAUUACUUUUUAUUGACGCCAGGCAAACACGAUUGACAUGCACUUACACGCUCGUUGAGUGUCAUUUUGCCACUUGCGGUGCCAUUGCCCGCAU__________
.......(((((((((((.....)))))))(((((((((((((.(((.(..((..((........))..))..).)))...))))))).....)))))).....))))............ (-22.80 = -24.68 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:11 2006