Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,984,466 – 1,984,562 |
Length | 96 |
Max. P | 0.913526 |
Location | 1,984,466 – 1,984,562 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 86.08 |
Mean single sequence MFE | -22.96 |
Consensus MFE | -18.86 |
Energy contribution | -19.14 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.05 |
Mean z-score | -1.96 |
Structure conservation index | 0.82 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1984466 96 + 23771897 CCCAAUUCGACCCGCCCCAAAUCAUUGGGUUUCAUGGCUGUCACGCCAGCCACGUCUCAUUUAACAUAAUGAUCCUGACUGCAUUCGGUGUGGGUG .........((((((.((.((((((..((.....((((((......))))))....(((((......))))).))..).)).))).)).)))))). ( -28.90) >DroSec_CAF1 35465 88 + 1 CCCAAUUCGACCCGCCCCAAAUCAUGGGGUUUCAUGGCUGUCACGCCAGCCACGUCUCAUUUAACAUAAUGAUCCUGACUGCAUUCGG-------- ........(((..((((((.....))))))....((((((......)))))).)))(((((......)))))..((((......))))-------- ( -23.70) >DroSim_CAF1 49942 88 + 1 CCCAAUUCGACCCGCCCCAAAUUAUGGGGUUUCAUGGCUGUCACGCCAGCCACGUCUCAUUUAACAUAAUGAUCCUGACUGCAUUCGG-------- ........(((..((((((.....))))))....((((((......)))))).)))(((((......)))))..((((......))))-------- ( -23.70) >DroEre_CAF1 41351 81 + 1 UA-------ACCCGCCCCAAAUCAUGAGGUUUCAUGGCUGUCACGGCAGCCACGUCUCAUUUAACUUAAUGAUCCUGACUGCAUUUGC-------- ..-------........((((((((.(((.....(((((((....)))))))....(((((......))))).))).).)).))))).-------- ( -19.60) >DroYak_CAF1 36341 80 + 1 UC--------CCCGCCUCAAAUCAUGGGGUUUCAUGGCUGUCACGCCAGCCACGUCUCAUUUAACUUAAUGAUCCUGACUGCAUUUGC-------- ..--------...((((((.....))))))....((((((......)))))).((((((((......)))))....))).........-------- ( -18.90) >consensus CCCAAUUCGACCCGCCCCAAAUCAUGGGGUUUCAUGGCUGUCACGCCAGCCACGUCUCAUUUAACAUAAUGAUCCUGACUGCAUUCGG________ .............((((((.....))))))....((((((......)))))).((((((((......)))))....)))................. (-18.86 = -19.14 + 0.28)
Location | 1,984,466 – 1,984,562 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 86.08 |
Mean single sequence MFE | -28.50 |
Consensus MFE | -21.46 |
Energy contribution | -21.74 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -2.00 |
Structure conservation index | 0.75 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1984466 96 - 23771897 CACCCACACCGAAUGCAGUCAGGAUCAUUAUGUUAAAUGAGACGUGGCUGGCGUGACAGCCAUGAAACCCAAUGAUUUGGGGCGGGUCGAAUUGGG ..((((...(((.(((..((.(..(((((......)))))..)(((((((......)))))))))..(((((....))))))))..)))...)))) ( -34.70) >DroSec_CAF1 35465 88 - 1 --------CCGAAUGCAGUCAGGAUCAUUAUGUUAAAUGAGACGUGGCUGGCGUGACAGCCAUGAAACCCCAUGAUUUGGGGCGGGUCGAAUUGGG --------((((............(((((......)))))((((((((((......)))))))....(((((.....)))))...)))...)))). ( -29.40) >DroSim_CAF1 49942 88 - 1 --------CCGAAUGCAGUCAGGAUCAUUAUGUUAAAUGAGACGUGGCUGGCGUGACAGCCAUGAAACCCCAUAAUUUGGGGCGGGUCGAAUUGGG --------((((............(((((......)))))((((((((((......)))))))....(((((.....)))))...)))...)))). ( -29.40) >DroEre_CAF1 41351 81 - 1 --------GCAAAUGCAGUCAGGAUCAUUAAGUUAAAUGAGACGUGGCUGCCGUGACAGCCAUGAAACCUCAUGAUUUGGGGCGGGU-------UA --------......((((((((..(((((......)))))..).)))))))(((..(((.(((((....)))))..)))..)))...-------.. ( -24.80) >DroYak_CAF1 36341 80 - 1 --------GCAAAUGCAGUCAGGAUCAUUAAGUUAAAUGAGACGUGGCUGGCGUGACAGCCAUGAAACCCCAUGAUUUGAGGCGGG--------GA --------((....))........(((((......)))))..((((((((......))))))))...((((............)))--------). ( -24.20) >consensus ________CCGAAUGCAGUCAGGAUCAUUAUGUUAAAUGAGACGUGGCUGGCGUGACAGCCAUGAAACCCCAUGAUUUGGGGCGGGUCGAAUUGGG ........................(((((......)))))..((((((((......))))))))...(((((.....))))).............. (-21.46 = -21.74 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:03 2006