Locus 6669

Sequence ID 3L_DroMel_CAF1
Location 17,741,439 – 17,741,536
Length 97
Max. P 0.995419
window10855 window10856

overview

Window 5

Location 17,741,439 – 17,741,536
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 84.84
Mean single sequence MFE -25.43
Consensus MFE -23.92
Energy contribution -24.37
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -3.13
Structure conservation index 0.94
SVM decision value 2.57
SVM RNA-class probability 0.995419
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17741439 97 + 23771897
UUCCUCUACCCCACCACCCCCUCACUUUUCCUUUGCCACGGCACACAGUUCUAGGACUCUGGAAGGGCCUGUGGCUGCUUCAUUACCCUAAUGAACU
..........((((...(((.((..........(((....)))((.((((....)))).)))).)))...))))....(((((((...))))))).. ( -20.80)
>DroSec_CAF1 22650 83 + 1
UUUGCCU------------C--CUCUUUUCCUUUGCCACGGCCCACAGUUCUAGGACUCUGGAUGGGCCUGUGGCUGCUUCAUUACCCUAAUGAACU
.......------------.--............(((((((((((....(((((....))))))))))).)))))...(((((((...))))))).. ( -27.40)
>DroSim_CAF1 25853 83 + 1
UUUGCCU------------C--CUCUUUUCCUUUGCCACGGCCCACAGGUCUAGGACUCUGGAUGGGCCUGUGGCUGCUUCAUUACCCUAAUGAACU
.......------------.--............(((((((((((((((((...))).)))..)))))).)))))...(((((((...))))))).. ( -28.10)
>consensus
UUUGCCU____________C__CUCUUUUCCUUUGCCACGGCCCACAGUUCUAGGACUCUGGAUGGGCCUGUGGCUGCUUCAUUACCCUAAUGAACU
..................................((((((((((....((((((....))))))))))).)))))...(((((((...))))))).. (-23.92 = -24.37 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 17,741,439 – 17,741,536
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 84.84
Mean single sequence MFE -27.43
Consensus MFE -21.97
Energy contribution -22.63
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.25
Structure conservation index 0.80
SVM decision value 0.82
SVM RNA-class probability 0.859692
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17741439 97 - 23771897
AGUUCAUUAGGGUAAUGAAGCAGCCACAGGCCCUUCCAGAGUCCUAGAACUGUGUGCCGUGGCAAAGGAAAAGUGAGGGGGUGGUGGGGUAGAGGAA
..(((((((...)))))))((..((((..(((((..((...((((.........(((....))).))))....))..))))).)))).))....... ( -27.30)
>DroSec_CAF1 22650 83 - 1
AGUUCAUUAGGGUAAUGAAGCAGCCACAGGCCCAUCCAGAGUCCUAGAACUGUGGGCCGUGGCAAAGGAAAAGAG--G------------AGGCAAA
..(((((((...)))))))...(((((.(((((((....(((......)))))))))))))))............--.------------....... ( -25.80)
>DroSim_CAF1 25853 83 - 1
AGUUCAUUAGGGUAAUGAAGCAGCCACAGGCCCAUCCAGAGUCCUAGACCUGUGGGCCGUGGCAAAGGAAAAGAG--G------------AGGCAAA
..(((((((...)))))))...(((((.((((((..(((.(((...)))))))))))))))))............--.------------....... ( -29.20)
>consensus
AGUUCAUUAGGGUAAUGAAGCAGCCACAGGCCCAUCCAGAGUCCUAGAACUGUGGGCCGUGGCAAAGGAAAAGAG__G____________AGGCAAA
..(((((((...)))))))...(((((.((((((..(((..........)))))))))))))).................................. (-21.97 = -22.63 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:10 2006