Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,740,561 – 17,740,681 |
Length | 120 |
Max. P | 0.911074 |
Location | 17,740,561 – 17,740,681 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.44 |
Mean single sequence MFE | -30.25 |
Consensus MFE | -24.67 |
Energy contribution | -24.05 |
Covariance contribution | -0.62 |
Combinations/Pair | 1.16 |
Mean z-score | -2.56 |
Structure conservation index | 0.82 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.911074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17740561 120 + 23771897 AUUUUCCAUGACUGCAAAUGUGCAUAUUUAUGAGUGAGGGCAGUCAAAAAUUCAUAAGCAGGCAAUGCGCCAAAAAUCAUUUGCAAAAUCCAAAUGAUCCCUGUGCCCCAAUUGAAAGAA .((((((((((.((((....))))...)))))..((.(((((..................(((.....)))....((((((((.......)))))))).....)))))))...))))).. ( -26.60) >DroSec_CAF1 21770 119 + 1 AUUUUCCAUCACUGCAAAUGUGCAUAUUUAUAAGUGAGGGCAGUCAAAAAUUCAUAAGCAGGCAAUACGCCAAAAAUCAUUUGCGAAAUCCAAAUGAUG-CUGUGCCCCAAUUGAAAGAA .(((((..(((((..(((((....)))))...)))))(((((..............(((.(((.....)))....((((((((.(....))))))))))-)).))))).....))))).. ( -28.06) >DroSim_CAF1 25023 119 + 1 AUUUUCCAUGACUGCAAAUGUGCAUAUUUAUGAGUGAGGGCAGUCAAAAAUUCAUAAGCAGGCAAUACGCCAAAAAUCAUUUGCAAAAUCCAAAUGAUG-CUGUGCCCCAAUUGAAAGAA .(((((..(((((((.......(((....))).......)))))))......((((.((.(((.....)))....((((((((.......)))))))))-)))))........))))).. ( -28.14) >DroEre_CAF1 36521 119 + 1 AUUUUCCAUGACUGCAAAUGCGCAUAUUUAUGAGCGAGGGCAGUCAAAAAUGCAUAAGCAGGCAAUUCGCCAAAAAUCGUUUGCAAAAUCCGAAUGAUG-CUGUGUCCCAGUUGGAAGAC .((((((((((((((...(((.(((....))).)))...))))))).....(((((.((.(((.....)))....((((((((.......)))))))))-))))))......))))))). ( -38.20) >consensus AUUUUCCAUGACUGCAAAUGUGCAUAUUUAUGAGUGAGGGCAGUCAAAAAUUCAUAAGCAGGCAAUACGCCAAAAAUCAUUUGCAAAAUCCAAAUGAUG_CUGUGCCCCAAUUGAAAGAA .((((((((((.(((......)))...)))))(((..(((((..................(((.....)))....((((((((.......)))))))).....)))))..)))))))).. (-24.67 = -24.05 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:08 2006