Locus 6666

Sequence ID 3L_DroMel_CAF1
Location 17,738,934 – 17,739,054
Length 120
Max. P 0.532412
window10851

overview

Window 1

Location 17,738,934 – 17,739,054
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.61
Mean single sequence MFE -19.79
Consensus MFE -17.17
Energy contribution -17.55
Covariance contribution 0.38
Combinations/Pair 1.07
Mean z-score -1.45
Structure conservation index 0.87
SVM decision value -0.00
SVM RNA-class probability 0.532412
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17738934 120 + 23771897
UUUAAGUCAAUUAGAAAAUUUCCUUUUUCCUGACUUUCCAACUUUAUCAAUUUUUUUCCUGUCUGCUCGAGCUUCCUUAGCCAGUCUCACUUUGUGCCAAAGUACGAAGGACAAACAAAA
...((((((....(((((......))))).)))))).......................((((.(((.(.(((.....)))))))....((((((((....))))))))))))....... ( -21.50)
>DroSec_CAF1 20138 120 + 1
UUUAAGUCAAUUAGAAAAUUUCCUUUUUCCUGACUUUCCAACUUUAUCAAUUUUUUUCCUGUCUGCUCGAGCUUCCUUAGCCAGUCUCACUUUGUGCCCAAGUACGAAGGACAAACAAAA
...((((((....(((((......))))).)))))).......................((((.(((.(.(((.....)))))))....((((((((....))))))))))))....... ( -21.50)
>DroSim_CAF1 23400 120 + 1
UUUAAGUCAAUUAGAAAAUUUCCUUUUUCCUGACUUUUCAACUUUAUCAAUUUUUUUCCUGUCUGCUCGAGCUUCCUUAGCCAGUCUCACUUUGUGCCCAAGUACGAAGGACAAACAAAA
...((((((....(((((......))))).)))))).......................((((.(((.(.(((.....)))))))....((((((((....))))))))))))....... ( -21.50)
>DroEre_CAF1 34929 118 + 1
UUGAACUCAAUUAGAAAAUUUCCUUUUUCCUGGCUUCCAAACUUUAGCAAUUU-UUUCCUGUCUGCUCGAGCUUCCUUGGCCAUUCUCACUUU-UGCCAGCGUACGAAGAACAAACAAAA
.(((.........(((((......))))).(((((......(((.((((....-.........)))).))).......)))))...)))((((-(((....))).))))........... ( -14.64)
>consensus
UUUAAGUCAAUUAGAAAAUUUCCUUUUUCCUGACUUUCCAACUUUAUCAAUUUUUUUCCUGUCUGCUCGAGCUUCCUUAGCCAGUCUCACUUUGUGCCAAAGUACGAAGGACAAACAAAA
...((((((....(((((......))))).)))))).......................((((.....(.(((.....)))).......((((((((....))))))))))))....... (-17.17 = -17.55 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:05 2006