Locus 6664

Sequence ID 3L_DroMel_CAF1
Location 17,736,189 – 17,736,282
Length 93
Max. P 0.987690
window10846

overview

Window 6

Location 17,736,189 – 17,736,282
Length 93
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 94.13
Mean single sequence MFE -26.94
Consensus MFE -23.15
Energy contribution -22.71
Covariance contribution -0.44
Combinations/Pair 1.17
Mean z-score -2.00
Structure conservation index 0.86
SVM decision value 2.09
SVM RNA-class probability 0.987690
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17736189 93 + 23771897
AUUCCACCAUGUUGU------AUGGCGGAGGCGUGUCAGAACGAGCCAUAAGCAGUUAAAAUAUGCAAAGUACAGCGCCGGCAACAAUGGCGAACAACA
....(.(((((((((------.(((((..(((.(((....))).)))....(((.........))).........)))))))))).)))).)....... ( -26.20)
>DroSec_CAF1 17386 93 + 1
AUUCCACCAUGUUGC------AUGGCGGAGGCGUGUCAGAACGAGCCAUAAGCAGUUAAAAUAUGCAAAGUACAGCGCCGGCAACAAUGGCGAACAACA
....(.(((((((((------.(((((..(((.(((....))).)))....(((.........))).........)))))))))).)))).)....... ( -28.70)
>DroSim_CAF1 20103 93 + 1
AUUCUACCAUGUUGU------AUGGCGGAGGCGUGUCCGAACGAGCCAUAAGCAGUUAAAAUAUGCAAAGUACAGCGCCGGCAACAAUGGCGAACAACA
.(((..(((((((((------.(((((..(((.(((....))).)))....(((.........))).........)))))))))).)))).)))..... ( -25.50)
>DroEre_CAF1 32238 92 + 1
AU-CCACCAUGUUGU------AUGGCGGAGGCGUGUCAGAACGAGCCAUAAGCAGUUAAAAUAUGCAAAGUACAGCGCCGGCAACAAUGGCGAACAACA
..-.(.(((((((((------.(((((..(((.(((....))).)))....(((.........))).........)))))))))).)))).)....... ( -26.20)
>DroYak_CAF1 32877 99 + 1
AUUCCACUGUGUUGUAGUUGCAUGGCGAAGGCGAGUCAGAACGAGCCAUAAGCAGUUAAAAUAUGCAAAGUACAGCGCCGGCAACAAUGGCGAACAACA
.........(((..(.(((((.(((((..(((..((....))..)))....(((.........))).........)))))))))).)..)))....... ( -28.10)
>consensus
AUUCCACCAUGUUGU______AUGGCGGAGGCGUGUCAGAACGAGCCAUAAGCAGUUAAAAUAUGCAAAGUACAGCGCCGGCAACAAUGGCGAACAACA
....(.(((((((((.......(((((..(((.(((....))).)))....(((.........))).........)))))))))).)))).)....... (-23.15 = -22.71 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:00 2006