| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,736,081 – 17,736,172 |
| Length | 91 |
| Max. P | 0.995324 |
| Location | 17,736,081 – 17,736,172 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 96.53 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -17.72 |
| Energy contribution | -17.92 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.85 |
| SVM decision value | 2.56 |
| SVM RNA-class probability | 0.995324 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17736081 91 + 23771897 AAAUAGAAGCACCCGCAACAUGAUAAUAAGAAAGACAAAAGUAAUUU-UUUGCCUGCGAAAAGAAAGUUUGUCUUUUAUUACAAUGUUCUGG- ............(((.(((((..((((((..((((((((.....(((-((((....)))))))....))))))))))))))..))))).)))- ( -20.90) >DroSec_CAF1 17277 92 + 1 AAAUAGAAGCAGCCGCAACAUGAUAAUAAGAAAGACAAAAGUAAUUU-UUUGCCGACGAAAAGAAAGUUUGUCUUUUAUUACAAUGUUCUGGG ............(((.(((((..((((((..((((((((.....(((-((((....)))))))....))))))))))))))..))))).))). ( -20.80) >DroSim_CAF1 19994 92 + 1 AAAUAGAAGCAGCCGCAACAUGAUAAUAAGAAAGACAAAAGUAAUUU-UUUGCCGGCGAAAAGAAAGUUUGUCUUUUAUUACAAUGUUCUGGG ............(((.(((((..((((((..((((((((.....(((-((((....)))))))....))))))))))))))..))))).))). ( -22.10) >DroEre_CAF1 32131 91 + 1 AAAUAGAAGCGCCCGCAACACGAUAAUAAGAAAGACAAAAGUAAUUU-UUUGCCGGCGAAAAGAAAGUUUGUCUUUUAUUACAAUGUUCUGG- ...(((((((....)).............((((((((((.....(((-((((....)))))))....)))))))))).........))))).- ( -18.40) >DroYak_CAF1 32769 92 + 1 AAAUAGAAGCACCCGCAACAUGAUAAUAAGAAAGACAAAAGUAAUUUUUUUGCCGGCGAAAAGAAAGUUUGUCUUUUAUUACAAUGUUCUGG- ............(((.(((((..((((((..((((((((.....((((((((....))))))))...))))))))))))))..))))).)))- ( -21.80) >consensus AAAUAGAAGCACCCGCAACAUGAUAAUAAGAAAGACAAAAGUAAUUU_UUUGCCGGCGAAAAGAAAGUUUGUCUUUUAUUACAAUGUUCUGG_ ............(((.(((((..((((((..((((((((.....(((.((((....)))).)))...))))))))))))))..))))).))). (-17.72 = -17.92 + 0.20)
| Location | 17,736,081 – 17,736,172 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 96.53 |
| Mean single sequence MFE | -15.90 |
| Consensus MFE | -14.67 |
| Energy contribution | -14.51 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17736081 91 - 23771897 -CCAGAACAUUGUAAUAAAAGACAAACUUUCUUUUCGCAGGCAAA-AAAUUACUUUUGUCUUUCUUAUUAUCAUGUUGCGGGUGCUUCUAUUU -((..(((((.(((((((((((((((.....((((.(....).))-))......))))))))..))))))).)))))..))............ ( -16.00) >DroSec_CAF1 17277 92 - 1 CCCAGAACAUUGUAAUAAAAGACAAACUUUCUUUUCGUCGGCAAA-AAAUUACUUUUGUCUUUCUUAUUAUCAUGUUGCGGCUGCUUCUAUUU .((..(((((.(((((((..((((((......))).)))((((((-(......)))))))....))))))).)))))..))............ ( -16.40) >DroSim_CAF1 19994 92 - 1 CCCAGAACAUUGUAAUAAAAGACAAACUUUCUUUUCGCCGGCAAA-AAAUUACUUUUGUCUUUCUUAUUAUCAUGUUGCGGCUGCUUCUAUUU .((..(((((.(((((((((((((((.....((((.(....).))-))......))))))))..))))))).)))))..))............ ( -15.40) >DroEre_CAF1 32131 91 - 1 -CCAGAACAUUGUAAUAAAAGACAAACUUUCUUUUCGCCGGCAAA-AAAUUACUUUUGUCUUUCUUAUUAUCGUGUUGCGGGCGCUUCUAUUU -((..(((((.(((((((((((((((.....((((.(....).))-))......))))))))..))))))).)))))..))............ ( -16.30) >DroYak_CAF1 32769 92 - 1 -CCAGAACAUUGUAAUAAAAGACAAACUUUCUUUUCGCCGGCAAAAAAAUUACUUUUGUCUUUCUUAUUAUCAUGUUGCGGGUGCUUCUAUUU -((..(((((.(((((((((((((((.....((((.(....).)))).......))))))))..))))))).)))))..))............ ( -15.40) >consensus _CCAGAACAUUGUAAUAAAAGACAAACUUUCUUUUCGCCGGCAAA_AAAUUACUUUUGUCUUUCUUAUUAUCAUGUUGCGGGUGCUUCUAUUU .((..(((((.(((((((((((((((............................))))))))..))))))).)))))..))............ (-14.67 = -14.51 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:59 2006