Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,982,661 – 1,982,757 |
Length | 96 |
Max. P | 0.519015 |
Location | 1,982,661 – 1,982,757 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 82.12 |
Mean single sequence MFE | -29.58 |
Consensus MFE | -17.74 |
Energy contribution | -18.82 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.80 |
Structure conservation index | 0.60 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1982661 96 + 23771897 AGAGUCAAGAGUCCAGCAAAAAAGCUGCU-UCUUAAUCAGCUUGAAAACGCUGCCGUCACUGGGCACUCAAUCGC-AGAAAUGGCGAGUGGGUCCUGA .((...(((((..((((......)))).)-))))...((((.(....).))))...))...(((.(((((.((((-(....).)))).)))))))).. ( -26.60) >DroSec_CAF1 33630 89 + 1 ------AAGAGACCAGCAAAAAAGCUGGU-UCUUAAUCAGCUUGAAUUUGCUGCCGUCACUG-GCACUCAAUCGC-AGAAAAGGCGAGUGGGUCCUGA ------.((.((((((((((.((((((((-.....))))))))...)))))))..))).))(-(.(((((.((((-.......)))).)))))))... ( -33.70) >DroSim_CAF1 47869 96 + 1 AGAGCCAAGAGUCCAGCAAAAAAGCUGCUUUCUUAAUCAGCUUGAAUUCGCUGCCGUCACUG-GCACUCAAUCGC-AGAAAUGGCGAGUGGGUCCUGG ...((((((((..((((......))))..)))))...((((........))))........)-))(((((.((((-(....).)))).)))))..... ( -29.10) >DroEre_CAF1 39472 79 + 1 -----------UCCAGCAG-AGAGCUGCU-UCUUAAUCAGCUUGAAUUUGCCGCCGUCACGG-GCACUCAACCGC-AGCAAUGGCGAGUGGGUA---- -----------((((((((-(((((((..-.......))))))...)))))((((((..(((-........))).-....))))))..))))..---- ( -23.60) >DroYak_CAF1 34451 91 + 1 AGAGUCAUGGGUCCAGCAG-AAAGCUGCU-UCUUAAUCAGCUUGAAUUUGCUGCCGUCACUG-GCACUCAACCGCCAGAAAUGGCGAGUGGGGC---- ..(((.((((...((((((-(((((((..-.......))))))...))))))))))).))).-((.((((..(((((....)))))..))))))---- ( -34.90) >consensus AGAG_CAAGAGUCCAGCAAAAAAGCUGCU_UCUUAAUCAGCUUGAAUUUGCUGCCGUCACUG_GCACUCAAUCGC_AGAAAUGGCGAGUGGGUCCUG_ .............((((((..((((((..........))))))....))))))............(((((.((((........)))).)))))..... (-17.74 = -18.82 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:01 2006