Locus 6659

Sequence ID 3L_DroMel_CAF1
Location 17,728,183 – 17,728,284
Length 101
Max. P 0.625772
window10829

overview

Window 9

Location 17,728,183 – 17,728,284
Length 101
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 90.72
Mean single sequence MFE -24.06
Consensus MFE -16.90
Energy contribution -17.26
Covariance contribution 0.36
Combinations/Pair 1.14
Mean z-score -2.23
Structure conservation index 0.70
SVM decision value 0.19
SVM RNA-class probability 0.625772
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17728183 101 + 23771897
GUCAGGGCAAGGAAGUG------AAUAUUAUAAAACCAUUCACUUCCAUUCGGUUCAAACUACUUCAGAUUGGAUCACAACUUCUGACCGAUAAGGGAAAAUUGUUA
(((((((...(((((((------(((...........))))))))))....(((((((.((.....)).))))))).....))))))).(((((.......))))). ( -26.80)
>DroSec_CAF1 9415 101 + 1
GUCAGGACAAGGAAGUG------AAUAUUAUAAAACCAUUCACUUCCAUUCGGUUCAAACUACUUCAGAUUGGAUUACAACUUCUGACCGAUAAGGGCAAAUUGUUA
(((((((...(((((((------(((...........))))))))))....(((((((.((.....)).))))))).....))))))).(((((.......))))). ( -25.10)
>DroSim_CAF1 12049 101 + 1
GUCAGGACAAGGAAGUG------AAUAUUAUAAAACCAUUCACUUCCAUUCGGUUCAAACUACUUCAGAUUGGAUUACAACUUCUGACCGAUAAGGGCAAAUUGUUA
(((((((...(((((((------(((...........))))))))))....(((((((.((.....)).))))))).....))))))).(((((.......))))). ( -25.10)
>DroEre_CAF1 23785 101 + 1
GUCAGGACAAGGAAGUG------AAUAUUAUAAAACAAUUCACUUCCAUUCGGUUCAAACUACUUCAGAUGGGUCUAAUACUUCUGACCGAUAAGGGAAAAUUGUUA
.....((((((((((((------(((...........))))))))))................(((..((.((((..........)))).))...)))...))))). ( -24.20)
>DroYak_CAF1 24228 107 + 1
GUCAGGAAAAAGAAGUGUACGAGUAUAUUAUAAAACAAUUCACCUCCACUCGGUUCAAACUACUUCAGAUGGAAUUAAAAGUUCUGACCGAUAAGGGAAAAUUGUUA
.............((((((....))))))....(((((((..(((....((((((..((((..(((.....))).....))))..))))))...)))..))))))). ( -19.10)
>consensus
GUCAGGACAAGGAAGUG______AAUAUUAUAAAACCAUUCACUUCCAUUCGGUUCAAACUACUUCAGAUUGGAUUACAACUUCUGACCGAUAAGGGAAAAUUGUUA
(((((((...(((((((.......................)))))))....(((((((.((.....)).))))))).....))))))).(((((.......))))). (-16.90 = -17.26 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:45 2006