| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,725,887 – 17,726,006 |
| Length | 119 |
| Max. P | 0.840206 |
| Location | 17,725,887 – 17,726,006 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.48 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -15.68 |
| Energy contribution | -16.04 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.840206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17725887 119 + 23771897 ACUCGGACAAAAGGAUCAAACCGCAAACACCGGUAUGUUUAAAAGUAAAUAAAUUUAUUCG-UAAAUUGCUAUUUAAAUACUUAUACCGAAAGUGCGAGUUAAAAGUACCGAGCGGAAAC .(((((((....((......))(((.....(((((((..((....((((((((((((....-))))))..))))))..))..)))))))....))).........)).))))).(....) ( -24.90) >DroSec_CAF1 7161 119 + 1 ACUCGGUCAAAAGGAUCAAACCGCAUACACCGGUAUGUUGAAAAAUAAACAAAUAUAUUCG-UAAAUUGAUAUUAAAAUACUAAUACCAAAAGUGUGAGUUAAAAGUACCGAGAGGAAAC .(((((((....((......)).(((((((..(((((((............)))))))..)-)...(((.(((((......))))).)))..)))))........).))))))....... ( -22.40) >DroSim_CAF1 7434 119 + 1 ACUCGGUCAAACGGAUCAAACCGCAUACACCGGUAUGUUGAAAAGUAAACAAAUAUAUUCG-UAAAUUGAUAUUAAAAUACUAAUACCAAAAGUGUGAGUUAAAAGUACCGAGAGGAAAC .(((((((...(((......)))(((((((..(((((((............)))))))..)-)...(((.(((((......))))).)))..)))))........).))))))....... ( -23.80) >DroEre_CAF1 21566 118 + 1 CCUCGACAAAAAGGAUCAAGCCGCCUACACCGGUAUGUUUAAAAGUAUAUACAU-UAAUGA-UAAAUAGUUAAUAAAGUACUCACACCGAAAGUGUGAGUUAAGUGUACCGAGCGGAAAC (((........)))......((((......(((((..(((((.......(((.(-((.(((-(.....)))).))).)))((((((.(....))))))))))))..))))).)))).... ( -29.50) >DroYak_CAF1 21985 116 + 1 CCUCGGUCAAAAGGAUCAAACCGCAAACACCGGUAUGUUUGAGAGU---UACAC-AAAUAAGUUGAUAGAUACUAAAAUACCUACAUCAAAAGUGUGAGUUAAGUGUACCGAGCGGAAAC ....((((.....))))...((((......(((((..(((((...(---(((((-.......(((((((.((......)).)))..))))..)))))).)))))..))))).)))).... ( -24.30) >consensus ACUCGGUCAAAAGGAUCAAACCGCAUACACCGGUAUGUUUAAAAGUAAAUAAAU_UAUUCG_UAAAUUGAUAUUAAAAUACUAAUACCAAAAGUGUGAGUUAAAAGUACCGAGCGGAAAC .(((((..........((.((((.......)))).))..........................................((((((((.....))))))))........))))).(....) (-15.68 = -16.04 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:44 2006