Locus 6656

Sequence ID 3L_DroMel_CAF1
Location 17,723,933 – 17,724,030
Length 97
Max. P 0.586173
window10824

overview

Window 4

Location 17,723,933 – 17,724,030
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 88.71
Mean single sequence MFE -26.98
Consensus MFE -20.36
Energy contribution -20.20
Covariance contribution -0.16
Combinations/Pair 1.19
Mean z-score -1.59
Structure conservation index 0.75
SVM decision value 0.11
SVM RNA-class probability 0.586173
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17723933 97 - 23771897
UAAUCAUACAAGCUGGUAGUUUCAGGAUCUCCAGAUUUCUGGGAUACUGGUACCUCUGUUGGCUGCAGUUCCAACUAG-AGCGCAUUUCAAAUUCUCU
..........((((..(((..((((.(((.((((....))))))).)))).....)))..))))((.((((......)-))))).............. ( -25.80)
>DroSec_CAF1 5265 97 - 1
UAACCAUACAAGCUGGAAGUUUCAGGAUCUCCAGAUUUCUGGGAUACUGGUACCUCUGUUGGCUGCAGUUCCAACUAG-AGCGCAUUUCAAAUGCUCU
...........((((((.((.((((.(((.((((....))))))).)))).)).)))(((((........)))))...-)))((((.....))))... ( -26.70)
>DroSim_CAF1 5480 98 - 1
UAACCAUACAAGCUGGUAGUUUCAGGAUCUCCAGAUUUCUGGGAUACUGGUACCUCUGUUGGCUGCAGUUCCAACUAGAAGCGCAUUUCAAAUGCUCC
...........(((((((...((((.(((.((((....))))))).))))))))((((((((........))))).))))))((((.....))))... ( -28.10)
>DroEre_CAF1 19567 97 - 1
UAACCAUACAAGCCGGUAGUUUUAGGGUCUCCAGUUUUCUGGGAUACUGGUACCUCCGUUGGCUGCAGUUCCAACUGC-AGCGCAUCUCAAAUGCCCG
........(((..(((..((.((((..((.((((....))))))..)))).))..))))))((((((((....)))))-)))((((.....))))... ( -33.40)
>DroYak_CAF1 19960 97 - 1
UAACCAUACAAGCCGGUAGUUUUAGGAUCUCCAGAUUUUUGGGAUACUGGUACCGCCUUUGGCUGCACCUCCGUCUCG-AGCGCAUACCAAAUACUUU
..........((((((..((.((((.(((.((((....))))))).)))).))..))...))))((..(((......)-)).)).............. ( -20.90)
>consensus
UAACCAUACAAGCUGGUAGUUUCAGGAUCUCCAGAUUUCUGGGAUACUGGUACCUCUGUUGGCUGCAGUUCCAACUAG_AGCGCAUUUCAAAUGCUCU
...........((.((..((.((((.(((.((((....))))))).)))).))..))(((((........))))).....))((((.....))))... (-20.36 = -20.20 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:40 2006