Locus 6654

Sequence ID 3L_DroMel_CAF1
Location 17,716,262 – 17,716,382
Length 120
Max. P 0.996767
window10820

overview

Window 0

Location 17,716,262 – 17,716,382
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 77.53
Mean single sequence MFE -25.04
Consensus MFE -21.35
Energy contribution -22.25
Covariance contribution 0.90
Combinations/Pair 1.16
Mean z-score -2.20
Structure conservation index 0.85
SVM decision value 2.75
SVM RNA-class probability 0.996767
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17716262 120 + 23771897
GCAAAGAGACUUGAAGCACAAGUCACUAGCAGCAUGCGUGCUGUCCAAUGCUGAGAACUCCACUUUAUUAAUAUCGAAAAAAUAUACAGAUUUUAAGAAGGUGACUUAAGCCACAUCCAU
(((.((.((((((.....)))))).)).((((((....))))))....))).........((((((.((((.(((.............))).)))).))))))................. ( -25.32)
>DroSec_CAF1 94013 101 + 1
GCAAAGAGACUUGAAGCACAAGUCACUAACAGCA--CGUGUUGUCC---------------CAUUUUUUGAAAUCUU--CAAUACACAGAUUUUAGGAAGAUAACUUAAGCCACAUCCAU
....((.((((((.....)))))).))....((.--...((((((.---------------...((((((((((((.--........))))))))))))))))))....))......... ( -20.70)
>DroSim_CAF1 88126 114 + 1
GCAAAGGGACUUGAAGCUCAAGUCACUAGCAGCA---GUAUUGUCCAAAGCUGACAACACCAAUUUUUUGAAAUCUU--CAAUACACAGAUUUUAAGAAGUUGACUUAAGCCACAUCCA-
.....((((((((.....)))))).......((.---((.(((((.......))))).))((((((((((((((((.--........))))))))))))))))......)).....)).- ( -29.10)
>consensus
GCAAAGAGACUUGAAGCACAAGUCACUAGCAGCA__CGUGUUGUCCAA_GCUGA_AAC_CCAAUUUUUUGAAAUCUU__CAAUACACAGAUUUUAAGAAGAUGACUUAAGCCACAUCCAU
((..((.((((((.....)))))).)).((((((....))))))................(((((((((((((((.............)))))))))))))))......))......... (-21.35 = -22.25 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:36 2006