Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,709,641 – 17,709,732 |
Length | 91 |
Max. P | 0.722188 |
Location | 17,709,641 – 17,709,732 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 82.37 |
Mean single sequence MFE | -21.50 |
Consensus MFE | -18.99 |
Energy contribution | -19.10 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.24 |
Structure conservation index | 0.88 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17709641 91 - 23771897 -------------------------CCUUUUUGAGCUAAUAAUAAAGUU-UUUGUACUGUACCCUCUGUUUUCUCAGUGUAUAGGUACAAAAACCACGUAUGCGGCUGGCUAGACAC -------------------------........(((((........(((-((((((((((((...(((......))).))))).))))))))))..((....))..)))))...... ( -22.90) >DroSec_CAF1 84578 112 - 1 UUC-----UUGUGAAUCUUUUCCCUCUUUUUUGAGCUAAUAAUAUAGUUUUUUGUACUGUACCCUCUGUUUUCUCAGUGUAUAGGUACAAAAACCACGUAUCCGGCUGGCUAGACAC .((-----(.((.(..(......(((......)))...........(.((((((((((((((...(((......))).))))).))))))))).)........)..).)).)))... ( -20.70) >DroSim_CAF1 81326 117 - 1 AUCAUGAAUUGUGAAUCUUUUCCCUCUUUUUUGAGCUAAUAAUAAAGUUUUUUGUACUAUACCCUCUGUUUUCUCAGUGUAUAGGUACAAAAACCACGUAUCCGGCUGGCUAGACAC .((((.....))))...................(((((........(.((((((((((((((...(((......))).))))).))))))))).).((....))..)))))...... ( -20.90) >consensus _UC_____UUGUGAAUCUUUUCCCUCUUUUUUGAGCUAAUAAUAAAGUUUUUUGUACUGUACCCUCUGUUUUCUCAGUGUAUAGGUACAAAAACCACGUAUCCGGCUGGCUAGACAC .................................(((((........(.((((((((((((((...(((......))).))))).))))))))).).((....))..)))))...... (-18.99 = -19.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:31 2006