Locus 6650

Sequence ID 3L_DroMel_CAF1
Location 17,708,800 – 17,708,890
Length 90
Max. P 0.549920
window10814

overview

Window 4

Location 17,708,800 – 17,708,890
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 78.55
Mean single sequence MFE -23.88
Consensus MFE -13.65
Energy contribution -13.32
Covariance contribution -0.33
Combinations/Pair 1.26
Mean z-score -1.62
Structure conservation index 0.57
SVM decision value 0.03
SVM RNA-class probability 0.549920
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17708800 90 + 23771897
AAUGUCCCGGCAAUUGCCGUCCGGCAAAAGCAGCAGAAGCACUUUGGCUGCCCAUGUUGAAAAUUCAAAUUUAUGCCAAGCCGGGGCCAA
...((((((((..(((((....)))))..(((((.(((....))).))))).((((((((....))))...))))....))))))))... ( -33.60)
>DroVir_CAF1 14250 79 + 1
AAUGUUUUAACCAUUGCCGUCCCA-----------CUAGAGCGCCGCCCGACAAUGUUGAAAAUUCAAAUUUAUGCCACGCAGAGGCCGA
....(((((((.((((.((..(..-----------(......)..)..)).)))))))))))............(((.......)))... (  -9.90)
>DroPse_CAF1 70759 78 + 1
AAUGCUCCAACAAUUGCCG------------AGCAGAAGCACUUUGGUUGUCCAUGUUGAAAAUUCAAAUUUAUGCCAAACCGGGGCCAG
...(((((...........------------.((....)).....((((...((((((((....))))...))))...)))))))))... ( -16.30)
>DroSec_CAF1 83768 90 + 1
AAUGUCCCGGCAAUUGCCGUCCGGCAAAAGCAGCAGAAGCACUUUGGCUGCCCAUGUUGAAAAUUCAAAUUUAUGCCAAGCCGGGGCCAA
...((((((((..(((((....)))))..(((((.(((....))).))))).((((((((....))))...))))....))))))))... ( -33.60)
>DroSim_CAF1 80520 90 + 1
AAUGUCCCGGCAAUUGCCGUCCGGCAAAAGCAGCAGAAGCACUUUGGCUGCCCAUGUUGAAAAUUCAAAUUUAUGCCAAGCCGGGGCCAA
...((((((((..(((((....)))))..(((((.(((....))).))))).((((((((....))))...))))....))))))))... ( -33.60)
>DroPer_CAF1 69039 78 + 1
AAUGCUCCAACAAUUGCCG------------AGCAGAAGCACUUUGGUUGUCCAUGUUGAAAAUUCAAAUUUAUGCCAAACCGGGGCCAG
...(((((...........------------.((....)).....((((...((((((((....))))...))))...)))))))))... ( -16.30)
>consensus
AAUGUCCCAACAAUUGCCGUCCGG_______AGCAGAAGCACUUUGGCUGCCCAUGUUGAAAAUUCAAAUUUAUGCCAAGCCGGGGCCAA
...(((((........................((....)).....((((...((((((((....))))...))))...)))))))))... (-13.65 = -13.32 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:30 2006