Locus 6647

Sequence ID 3L_DroMel_CAF1
Location 17,689,634 – 17,689,749
Length 115
Max. P 0.534308
window10808

overview

Window 8

Location 17,689,634 – 17,689,749
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 88.26
Mean single sequence MFE -24.29
Consensus MFE -17.12
Energy contribution -17.40
Covariance contribution 0.28
Combinations/Pair 1.18
Mean z-score -1.74
Structure conservation index 0.70
SVM decision value 0.00
SVM RNA-class probability 0.534308
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17689634 115 + 23771897
GUCAGGUAUCUCUUUUGAUAUAAAUCGAUUCACCUUUAAAAUUCGAUCUGCUUGAGAACUCUCCAUAACAGAAGCCAUUUGAAGAAACUUUAAAUCAGUUUCUGAAAUGGAUUUU
.(((((((((......)))....(((((..............)))))..))))))......(((((..(((((((.((((((((...))))))))..)))))))..))))).... ( -26.04)
>DroSec_CAF1 71798 115 + 1
GUCAGGAAUCUCUUUUAAUAUAAAUCGAUUCACCUUUAAAAUUCGAUCCGUUUGAGAACUUUCCAUAACAGAAGCCCUUUGAAGAAACUUAAAGUCAGUUUCUGAAAUGGAUUUU
.....(((((..(((......)))..)))))..........(((((.....))))).....(((((..(((((((.((((((......))))))...)))))))..))))).... ( -22.00)
>DroSim_CAF1 66846 115 + 1
GUCAGGAAUCUCUUUUAAUAUAAAUCGAUUCACCUUUAAAAUUCGAUCUGUUUGAGAACUUUCCAUAACAGAAGCCCUUUGAAGAAACUUAAAGUCAGUUUCUGAAACGGAUUUU
(((.((((..((((.....(((.(((((..............))))).)))..))))...))))....(((((((.((((((......))))))...))))))).....)))... ( -22.14)
>DroEre_CAF1 61738 115 + 1
GUCAGGAAUCUCUUUUAAUAUAAAUCGAUUAACCUUUAAAAUUCGAUCUGUUAGAGAGCUUUCUUUCACGGAAGCCCUUUGGAGAAACUUUGAAUCCGUUUCUUGAAUCGAUUGC
((((((..(((((......(((.(((((..............))))).))).)))))((((((......)))))))))((.(((((((.........))))))).))..)))... ( -23.64)
>DroYak_CAF1 47881 115 + 1
AUCGGGAAUCUCUUUCAAUAUAAAUCGAUUAACCUUUAAAAUUCGAUCUGUUAGAGAGCUUUCCAAAACAGAAGCCCUUUGAAGAAACUUUGAAUCAGUUUCUGUGAUCGAUUGU
((((((((.((((((.((((...(((((..............))))).))))))))))..))))...((((((((..((..(((...)))..))...))))))))...))))... ( -27.64)
>consensus
GUCAGGAAUCUCUUUUAAUAUAAAUCGAUUCACCUUUAAAAUUCGAUCUGUUUGAGAACUUUCCAUAACAGAAGCCCUUUGAAGAAACUUUAAAUCAGUUUCUGAAAUGGAUUUU
(((.((((..((((.....(((.(((((..............))))).)))..))))...))))....(((((((..(((((((...)))))))...))))))).....)))... (-17.12 = -17.40 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:25 2006