| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,687,307 – 17,687,409 |
| Length | 102 |
| Max. P | 0.707779 |
| Location | 17,687,307 – 17,687,409 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 74.73 |
| Mean single sequence MFE | -27.55 |
| Consensus MFE | -14.13 |
| Energy contribution | -14.38 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17687307 102 - 23771897 UGAAGGCUGGAACUAAAAAGCGCUGGGAGCCAGACUAAGCACAGGUUAAACAACAGC-------GAUGGCAACGACUAGCGUUUAACGCAAAUGCAUUUGGCUUUUGGC .....(((..........)))((..(((((((((..........(((((((....((-------..((....))....)))))))))((....)).)))))))))..)) ( -29.20) >DroSec_CAF1 69493 102 - 1 UGAAGGCUGGAAAUAAAAAGCGCUAGGAGCCAGACUAAGCACAGGUUAAACAACAGC-------GAUGGCAACGACUAGCGUUUAACGAAACUGCAUUUGGCUUUUGGC .....(((..........)))(((((((((((((....(((...(((((((....((-------..((....))....))))))))).....))).))))))))))))) ( -27.90) >DroSim_CAF1 64573 102 - 1 UGAAGGCUGGAACUAAAAAGCGCUAGGAGCCAGACUAAGCAAGGGUUAAACAACAGC-------GAUGGCAACGACUAGCGUUUAACGAAACUGCAUUUGGCUUUUGGC .....(((..........)))(((((((((((((....(((.(.(((((((....((-------..((....))....)))))))))....)))).))))))))))))) ( -28.00) >DroEre_CAF1 59545 88 - 1 UGAAGGCUGAAACUAA-AAGCGCUAGGAGCCAGGCUAAGCACAGGUUAAACAACAGC-------AAUGGCAACGACUAG-------------CGCUUUUGGCUUUUGGC .....((..(((((((-(((((((((..((((.(((..................)))-------..)))).....))))-------------))))))))).)))..)) ( -32.07) >DroYak_CAF1 45560 84 - 1 UGAAGGCUGGAACUAA-AAGCGCCAGGAGCCACGCUGAGCACAGGUUAAACAACAAC-------GACUGCGAA----AC-------------UGCAUUUGGCUUUUGGC .....(((........-.)))(((((((((((.((....(.(((.............-------..))).)..----..-------------.))...))))))))))) ( -23.56) >DroPer_CAF1 59940 105 - 1 AAAAGGCUAACAGCCAAAAGG----GAAGCGGGUCUAAACACAGGUUAAACAACAGCAGCGGGCGACUGAAACGGGAAUCGUUUAAUAAAACUGCAGUUGGCUUAUGGC ...((((((((((((.....(----((......))).......))))........(((((((....)))(((((.....))))).......)))).))))))))..... ( -24.60) >consensus UGAAGGCUGGAACUAAAAAGCGCUAGGAGCCAGACUAAGCACAGGUUAAACAACAGC_______GAUGGCAACGACUAGCGUUUAACGAAACUGCAUUUGGCUUUUGGC .....(((..........)))(((((((((((((...(((....)))...................((....))......................))))))))))))) (-14.13 = -14.38 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:24 2006