| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,686,540 – 17,686,636 |
| Length | 96 |
| Max. P | 0.613293 |
| Location | 17,686,540 – 17,686,636 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 73.08 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -11.31 |
| Energy contribution | -12.03 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17686540 96 + 23771897 U-UCCGUGUAGAACAAAG-------UAUGAGGCAAAAACAAACUUUAGCGGGCUAAUGGGAUGCCAUAAAGCAGCGGCAUUUGUCAAUAUCAAUUUUGAUGAGA (-(((((.(((..(((((-------(.((.........)).)))))...)..)))))))))((((..........))))((..((((........))))..)). ( -17.70) >DroPse_CAF1 60897 86 + 1 ---------A--------GCCGGAG-CCGGGGCAAAAGCAAACUUUUGCGGCCUAAUGGCAUGCCAUAAAGCAGCUACAUUUGUCAAUAUCAAUUUUGAUGAGA ---------(--------((....(-((.((((....((((....)))).))))...))).(((......))))))...((..((((........))))..)). ( -23.50) >DroGri_CAF1 3882 80 + 1 ---------------AA-------G-CAAAAGCAAAAGUAAACUUUUGCGGCCUAAUGGCGACCCAUAAAGUA-CAACAUUUGUCAGUAUCAAUUUUGAUGGGA ---------------..-------.-.....(((((((....))))))).(((....)))..((((((((((.-..((........))....))))).))))). ( -20.00) >DroEre_CAF1 58768 96 + 1 U-UCGGUGUAGAACAGAG-------AACGCGGCAAAAACAAACUUUAGCGGGCUAAUGGGAUGCCAUAAAGCAGCGGCAUUUGUCAAUAUCAAUUUUGAUGAGA .-..(((((.((.((((.-------..(((.((............(((....)))((((....))))...)).)))...)))))).)))))............. ( -20.10) >DroWil_CAF1 114024 84 + 1 UCUCUCUGUUGC--------------------AAAAAGCAAACUUUUGCGGCCUAAUGGCAUGCCAUAAAGCAACAACAUUUGUCAAUAUCAAUUUUGAUGAGA ..((((((((((--------------------.(((((....)))))((((((....))).)))......))))))......(((((........))))))))) ( -22.00) >DroPer_CAF1 59041 86 + 1 ---------A--------GCCGGAG-CCGGGGCAAAAGCAAACUUUUGCGGCCUAAUGGCAUGCCAUAAAGCAGCUACAUUUGUCAAUAUCAAUUUUGAUGAGA ---------(--------((....(-((.((((....((((....)))).))))...))).(((......))))))...((..((((........))))..)). ( -23.50) >consensus _________A________________CCGAGGCAAAAGCAAACUUUUGCGGCCUAAUGGCAUGCCAUAAAGCAGCAACAUUUGUCAAUAUCAAUUUUGAUGAGA ...............................(((((((....)))))))......((((....))))............((..((((........))))..)). (-11.31 = -12.03 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:23 2006