| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,686,298 – 17,686,390 |
| Length | 92 |
| Max. P | 0.840495 |
| Location | 17,686,298 – 17,686,390 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 79.72 |
| Mean single sequence MFE | -25.20 |
| Consensus MFE | -17.17 |
| Energy contribution | -18.86 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.840495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17686298 92 + 23771897 GCGGCAACACAUACGAGUUUUUGGCCAGGCCAAAACAAGAACCUGCUCAAACGCAGCCACGGGAA---------CAGUGUCUGUGAAAGGGCACUGCAAAA ((((............(((((.(((...)))))))).......(((((...(((((.((((....---------).))).)))))...))))))))).... ( -27.10) >DroSec_CAF1 68474 92 + 1 GCGGCAACACAUGCGAGUUUUGGGCCAGGCCAAAACAAGAACCUGCUCAAAGGCAGACACAGGAG---------UAGUGUCUGUGAAAGAGCACUGCAAAA ((((............(((((((......))))))).......(((((....((((((((.....---------..))))))))....))))))))).... ( -31.40) >DroSim_CAF1 63585 92 + 1 GCGGCAACACAUACGAGUUUUUGGCCAGGCCAAAACAAGAACCUGCUCAAGGGCAGACACAGGAG---------CAGUGUCUGUGAAAGAGCACUGCAAAA ((((............(((((.(((...)))))))).......(((((....((((((((.....---------..))))))))....))))))))).... ( -29.30) >DroEre_CAF1 58523 92 + 1 GCGGCUACACAUACGAGUUUUUGGCCAGGCCAGAACAAGAACCUGCUCAAAGGCAGACACGGCAG---------CAGUGUCUACCAAAGCACACUGCACAA ...(((..........(((((.(((...))))))))......(((((....)))))....))).(---------((((((((.....)).))))))).... ( -26.60) >DroYak_CAF1 44516 101 + 1 GCGGCUACACAUGCGAGUUUUUGGCCAGGCCAAAACAAGAACCUGCUCAAAGGCAGACACAGCAGACAGAGGAACAGUAUCUGCAAAAGAACACUGCACAA ((((.......(((..(((((.(((...))))))))......(((((....))))).....)))(.((((.........))))).........)))).... ( -22.90) >DroAna_CAF1 58699 75 + 1 GCGGCUACACAUACGAGUUUUUGGCCUGGCCGAAACAAAAACUGGCACAAAGG----------AG---------CAGU-------AAGGAGCACAGGGAAA ...(((...(.((((..(((((((((.(.............).))).))))))----------..---------).))-------).).)))......... ( -13.92) >consensus GCGGCAACACAUACGAGUUUUUGGCCAGGCCAAAACAAGAACCUGCUCAAAGGCAGACACAGGAG_________CAGUGUCUGUGAAAGAGCACUGCAAAA ((((............(((((.(((...))))))))........((((....((((((((................))))))))....)))).)))).... (-17.17 = -18.86 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:22 2006