Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,676,066 – 17,676,163 |
Length | 97 |
Max. P | 0.998365 |
Location | 17,676,066 – 17,676,163 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 92.99 |
Mean single sequence MFE | -25.88 |
Consensus MFE | -21.30 |
Energy contribution | -21.98 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.06 |
Mean z-score | -3.04 |
Structure conservation index | 0.82 |
SVM decision value | 3.08 |
SVM RNA-class probability | 0.998365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17676066 97 - 23771897 GUUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUCAAUCGAUUGUUUAAUUCAUUUCGAAGACAAUUUGGUUGGUCAACGAAAAAUUCAUAGAAAC (((((((((((..((((..(((((...........((((((((((((...(((.....)))))))).))))))))))))..)))).))))))))))) ( -25.00) >DroSec_CAF1 58176 97 - 1 GUUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUGAAUCGAUUGUUUAAUUCACUUGCCAGACAAAUUGGUUGGUCAAGUAAAAAUUCAUAGAAAC (((((((((((..(((((.((((((....((((.(((((..(....)..))))).))))..(((......))))))))).))))).))))))))))) ( -27.90) >DroSim_CAF1 53238 97 - 1 GUUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUGAAUCGAUUGUUUAAUUCACUUGGCAGACAAUCUGGUUGGUCAAGUAAAAAUUCAUAGAAAC (((((((((((..(((((.(((((..(((((.(.(((((..(....)..)))))..).)))))((((...))))))))).))))).))))))))))) ( -28.60) >DroEre_CAF1 48510 97 - 1 GUUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUCAAUCGAUUGUUUAAUUUACUUGACAGACAAUUGGGUUGGUCAACUAAAAAUGCAUAGAAAC (((((((((....(((((.(((((......(((..((((.(.(((((..........))))).).))))..)))))))).)))))...))))))))) ( -23.60) >DroYak_CAF1 34170 97 - 1 GCUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUCAAUCGAUUGUUUAAUUUACUUGACAGACAAUUUGGUUGGUCAAGUAAAAAUGCAUAGAAAU ..(((((((.((((.(..(((((((......)).)))))..)..))))..((((((((((.(((......))).))))))))))....))))))).. ( -24.30) >consensus GUUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUCAAUCGAUUGUUUAAUUCACUUGACAGACAAUUUGGUUGGUCAAGUAAAAAUUCAUAGAAAC (((((((((((..(((((.((((((...........((((((((((((............)))))))).)))))))))).))))).))))))))))) (-21.30 = -21.98 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:17 2006