| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,661,886 – 17,661,978 |
| Length | 92 |
| Max. P | 0.657679 |
| Location | 17,661,886 – 17,661,978 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.67 |
| Mean single sequence MFE | -17.57 |
| Consensus MFE | -10.20 |
| Energy contribution | -10.70 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17661886 92 + 23771897 UGGCCAAGUCGACGCUGAAAGCUCAUCUCUAGGGAUUUCUGCCUCAAAAUUAUGAUUUAUUCUUACGUUAUAAUUU-UCUUUCUCUUU--CGCCG----- .(((......((.((.((((.(((.......))).)))).)).))(((((((((((.((....)).))))))))))-)..........--.))).----- ( -19.30) >DroSec_CAF1 38654 92 + 1 CGACCAAGUCGACGCUGAAAGCUCAUCUCUAGAGAUUUCUGCCUCAAAAUUAUGAUUUAUUCUUAUGUUAUAAUUU-UCUUUCUCUUU--CGCCG----- .(((...)))((.((.((((.(((.......))).)))).)).))(((((((((((.((....)).))))))))))-)..........--.....----- ( -16.20) >DroEre_CAF1 34926 94 + 1 CGGCCAAGCCGACGCUGAAAGCUCAUCUCUAGAGAUUUGUGGCUCAAAAUUAUGAUUUAUUCUUACGUUAUAAUUU-UCUUUCUCUUU--CGCCG---GC ((((..((((((.((.....))))((((....))))....)))).(((((((((((.((....)).))))))))))-)..........--.))))---.. ( -21.80) >DroYak_CAF1 20128 97 + 1 CGGCCAAGUUGACGCUGAAAGCUCAUCUCUGGAGAUUUCUGCCUCAAAAUUAUGAUUUAUUCUUACGUUAUAAUUU-UCCUUCUCUUU--CGCCAUUCGC .(((......((.((.((((.(((.......))).)))).)).))(((((((((((.((....)).))))))))))-)..........--.)))...... ( -20.10) >DroAna_CAF1 36375 100 + 1 UUUCCCAGUCGACGCUGAAAGCUCAUCUCUAGAGAUUUCUGCCUUUAAAUUAUGAUUUAUACUUGUUUUAUAAUUUUUCUUUCUUUUUUUGGCAACCCAC .......(((((.((.((((.(((.......))).)))).))....(((((((((..((....))..)))))))))............)))))....... ( -15.70) >DroPer_CAF1 34029 80 + 1 ------------CGCUGAAAGCUCAUCUCUAGAGAUUCCUGCCUUAAAAUUAUGAUUUAUACUUAUAUUAUAAUUU-UCCUUCUCCUU--CUCUA----- ------------.((.....)).......((((((..........(((((((((((.((....)).))))))))))-).........)--)))))----- ( -12.31) >consensus CGGCCAAGUCGACGCUGAAAGCUCAUCUCUAGAGAUUUCUGCCUCAAAAUUAUGAUUUAUUCUUACGUUAUAAUUU_UCUUUCUCUUU__CGCCA_____ ..........((.((.((((.(((.......))).)))).)).)).((((((((((.((....)).))))))))))........................ (-10.20 = -10.70 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:11 2006