Locus 6636

Sequence ID 3L_DroMel_CAF1
Location 17,658,388 – 17,658,483
Length 95
Max. P 0.920333
window10792

overview

Window 2

Location 17,658,388 – 17,658,483
Length 95
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.68
Mean single sequence MFE -43.48
Consensus MFE -22.94
Energy contribution -24.33
Covariance contribution 1.39
Combinations/Pair 1.19
Mean z-score -2.31
Structure conservation index 0.53
SVM decision value 1.13
SVM RNA-class probability 0.920333
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17658388 95 - 23771897
CAAGGAUGGCAAGGCAU-UUGCCUGCUGC--CGGCGGCAUCUGGUGCCAUAAAUGUCUGCACAUUGUUGCAGGUG---------------G------UGCAAGUGCUUGCUUCUGCUGC
...(((.((((((.(((-((((..((..(--(.((((((....((((...........))))..)))))).))..---------------)------)))))))))))))))))..... ( -38.90)
>DroSec_CAF1 35258 104 - 1
CAAGGAUGGCAAGGCAU-UUGCCUGCUGC--CGGCGGCAUCUGCUGCCAUAAAUGUCUGCACAUUGUUGCAGGUGCA------GGAUCAGG------UGCAAGUGCUUGCUUCUGCUGC
...((.(((((.(((..-..)))))))))--)((((((....)))))).......((((((......)))))).(((------(((.((((------((....)))))).))))))... ( -43.90)
>DroSim_CAF1 35347 110 - 1
CAAGGAUGGCAAGGCAU-UUGCCUGCUGC--CGGCGGCAUCUGGUGCCAUAAAUGUCUGCACAUUGUUGCAGGUGCA------GGUUCAGGUGCAGGUGCAAGUGCCUGCUUCUGCUGC
...(((.((((.(((((-((((((((.((--(((((.(....).)))).......(((((((.(((...))))))))------))....)))))))..))))))))))))))))..... ( -46.70)
>DroEre_CAF1 31500 110 - 1
CAAGGAUGCCAAGGCAU-UUGCCUGCUGC--CGGCGGCAUCUGGUGCCAUAAAUGUCUGCACAUUGUGGCAGGUGCA------GCUGCAAGUGCAGGUGAAAGUGGCUGCUUCUGCUGC
...(((((((.((((..-..))))((...--..)))))))))...(((((...(..((((((.(((..((.......------))..)))))))))..)...))))).((....))... ( -46.90)
>DroWil_CAF1 61212 104 - 1
CGA---------GGCAUUUUGUCUGCUUCGGCUGCUGAUGCUCAUGCCAUAAAUGUCUGCACAUUGUUGCAGGUAUA------CGUAGAGGCGUCUGUGGGUGUGUGUGUGUGUGUAGA
.((---------((((.......))))))(((.((....))....))).......(((((((((....(((..((((------(.((.((....)).)).)))))..)))))))))))) ( -34.10)
>DroYak_CAF1 16526 116 - 1
CAAGGAUGGCAAGGCAU-UUGCCUGCUGC--CGGCGGCAUCUGGUGCCAUAAAUGUCUGCACAUUGUUGCAGGCGCAGGUGCUGGUGCAAGUGCAGGUGAAAGUGCCUGCUUCUGGUGC
((.(((.((((.(((((-((((((((.((--(((((((((...)))))......(((((((......)))))))......))))))......))))))..))))))))))))))..)). ( -50.40)
>consensus
CAAGGAUGGCAAGGCAU_UUGCCUGCUGC__CGGCGGCAUCUGGUGCCAUAAAUGUCUGCACAUUGUUGCAGGUGCA______GGUGCAGGUGCAGGUGCAAGUGCCUGCUUCUGCUGC
..((((.((((.(((((..((((.(((.....)))))))....))))).....(..(((((......)))))..)............................))))...))))..... (-22.94 = -24.33 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:10 2006