Locus 6634

Sequence ID 3L_DroMel_CAF1
Location 17,652,500 – 17,652,590
Length 90
Max. P 0.853322
window10790

overview

Window 0

Location 17,652,500 – 17,652,590
Length 90
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.64
Mean single sequence MFE -29.62
Consensus MFE -19.17
Energy contribution -19.33
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.65
SVM decision value 0.80
SVM RNA-class probability 0.853322
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17652500 90 + 23771897
ACCACGUAAUGGGCAACCUGUGCGUGG-----CUGAAGCCCCAUCGAGAAAAACUAG--AGGGACAG------AAUCCCUUUAUUCCACGACCAGGACGA--GGA
.(((((((..((....))..)))))))-----........((.(((........(((--(((((...------..)))))))).(((.......))))))--)). ( -30.50)
>DroSec_CAF1 29405 87 + 1
ACCACGUAAUGGGCAACCUGUGCGUGG-----CUGAAGCCCCAUCGAGAAAAACUAG--AGGGACAG------AAUCCCUUUAUUCCAGGACCAGA---A--GCA
.(((((((..((....))..)))))))-----(((...((.....(.(((....(((--(((((...------..)))))))))))).))..))).---.--... ( -25.80)
>DroSim_CAF1 29116 87 + 1
ACCACGUAAUGGGCAACCUGUGCGUGG-----CUGAAGCCCCAUCGAGAAAAACUAG--AGGGACAG------AAUCCCUUUAUUCCAGGACCAGA---A--GCA
.(((((((..((....))..)))))))-----(((...((.....(.(((....(((--(((((...------..)))))))))))).))..))).---.--... ( -25.80)
>DroEre_CAF1 25608 85 + 1
ACCACGUAAUGGGCAACCUGUGCGUGG-----CUGAAGCCCCAUCGAGAAAAACCAG--AGGGCCAGA--GAGGAUCCCUUUAUUUCAG------C---A--GCA
..((((((..((....))..))))))(-----(((((((((..((...........)--)))))...(--((((...)))))..)))))------)---.--... ( -29.00)
>DroYak_CAF1 10360 87 + 1
ACCACGUAAUGGGCAACCUGUGCGUGG-----CUGAAGCCCCAUCGAGAAAAACUAG--AGGGACAGCACCAGGAUCCCUUUAUUUCCG------C---A--GCA
..((((((..((....))..))))))(-----(((.........((.((((...(((--((((((........).))))))))))))))------)---)--)). ( -27.50)
>DroAna_CAF1 26690 101 + 1
ACCACGUAAUGGGCAACCUGUGCGUGGUCGCUCUGAAGCCCCAUCGAGAAAAACUAGUUAGGGGCAGGA-UGGCAUCCUUUUCU-GCA--CCCAAAAAGGGUGUG
((((((((..((....))..))))))))......((((((((....((.....)).....)))))((((-(...))))).))).-(((--(((.....)))))). ( -39.10)
>consensus
ACCACGUAAUGGGCAACCUGUGCGUGG_____CUGAAGCCCCAUCGAGAAAAACUAG__AGGGACAG______AAUCCCUUUAUUCCAG_ACCAGA___A__GCA
.(((((((..((....))..))))))).....(((...(((.....((.....)).....))).)))...................................... (-19.17 = -19.33 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:08 2006