Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,650,598 – 17,650,696 |
Length | 98 |
Max. P | 0.954236 |
Location | 17,650,598 – 17,650,696 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 71.40 |
Mean single sequence MFE | -24.15 |
Consensus MFE | -9.64 |
Energy contribution | -11.25 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.38 |
Mean z-score | -2.26 |
Structure conservation index | 0.40 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17650598 98 - 23771897 GUGUCUUUAAUUAAAUUGCAGCGCAGUUUGAAUAACGAACUGCGUUGGCAUUGGAGCUGGCAUUUCCACUUCAUGGCCUAUAAGCUAUAUGCUGUUGA ..................((((((((((((.....))))))))))))((((.((((.(((.....)))))))(((((......)))))))))...... ( -30.00) >DroPse_CAF1 23921 86 - 1 AGCUCUUUAAUUAAAUUGAAAUAGAGUACAAACAGAGCUCC------CCUUUGGAGCUG----CUCCUCUCAAUGACCCCCCAAUGAUA--CAUACAC .((((((((((...)))))...)))))........((((((------.....)))))).----......(((.((......)).)))..--....... ( -13.80) >DroSec_CAF1 27469 98 - 1 GUGUCUUUAAUUAAAUUGCAGCGCAGUUUGAAUAAAGAACUGCCUUGGCAUUGGAUAUGGUAUUUCCACUCCAUGGGCUAUAAGCUAUAUGCACUUCA (((((((((.(((((((((...))))))))).))))))...((..((((..((((..(((.....))).))))...))))...))......))).... ( -26.70) >DroSim_CAF1 27207 87 - 1 GUGUCUUUAAUUAAAUUGCAGCGCAGUUUGAAUAAAGAACUGCGUUGGCAUUGGAUAUGGUAUUUCCACUCCAUGGCCUAUAAGCUA----------- .................((((((((((((.......))))))))))(((..((((..(((.....))).))))..))).....))..----------- ( -26.00) >DroEre_CAF1 23677 95 - 1 GUGUCUUUAAUUAAAUUGCAACGCAGUUUAAAUAAUGAACUGUGUUACCAUUGAAGU-GGCAUUUGCACUCCAUGAACUGUAAGCUAGA--CAGCCAA .(((((.........(((((((((((((((.....)))))))))))..(((.((.((-(.(....)))))).)))....))))...)))--))..... ( -21.60) >DroYak_CAF1 8286 96 - 1 GUGUCUUUAAUUAAAUUGCAACGCAGUUUAAACAGUAAACUGUGUUGGCAUUGAAGUUGGCAUUUGCACUUCAUGACCUAUAAGCUAGA--CAGCUAA .(((((....(((...((((((((((((((.....))))))))))).))).((((((..((....)))))))).......)))...)))--))..... ( -26.80) >consensus GUGUCUUUAAUUAAAUUGCAACGCAGUUUAAAUAAAGAACUGCGUUGGCAUUGGAGAUGGCAUUUCCACUCCAUGACCUAUAAGCUAUA__CAGCUAA ..................(((((((((((.......)))))))))))....(((((............)))))......................... ( -9.64 = -11.25 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:07 2006