Locus 6632

Sequence ID 3L_DroMel_CAF1
Location 17,649,423 – 17,649,514
Length 91
Max. P 0.567636
window10788

overview

Window 8

Location 17,649,423 – 17,649,514
Length 91
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 74.60
Mean single sequence MFE -17.25
Consensus MFE -4.62
Energy contribution -4.78
Covariance contribution 0.16
Combinations/Pair 1.09
Mean z-score -1.66
Structure conservation index 0.27
SVM decision value 0.07
SVM RNA-class probability 0.567636
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17649423 91 + 23771897
AAAAUCAACAUGCAACAGCGAAAACG------------AGCAGCGGCAACAAAUGUCAGUUAUUUUCAUGUUGCUCUCAUUUUGACCUCGCCACCCAUCUUCC
.................((((....(------------(((((((....)(((((.....)))))....)))))))((.....))..))))............ ( -16.00)
>DroSec_CAF1 26285 91 + 1
AAAAUCAACAUGCAACAGCGAAAACG------------AGCAGCGGCAACAAAUGUCAGUUAUUUUCAUGUUGCUCUCAUUUUGCCUUUGCCACCCAUACUCC
...........((((..((((((..(------------((.(((((((..(((((.....)))))...)))))))))).))))))..))))............ ( -21.30)
>DroSim_CAF1 26005 91 + 1
AAAAUCAACAUGCAACAGCGAAAACG------------AGCAGCGGCAACAAAUGUCAGUUAUUUUCACAUUGCUCUCAUUUUGCCCUCGCCACCCAUACUCC
...........((....((((((..(------------((.((((....).(((((.((.....)).))))))))))).))))))....))............ ( -15.00)
>DroEre_CAF1 22429 91 + 1
AAAAUCAACAUGCAACGG------CGAAAACGAAUACGAGCAGCAGCAACAAAUGUCAGUUAUUUUCAUGUUGCU-----UUUGCCCUCGCCACACAU-AUGC
................((------(((...((....)).((((.(((((((((((.....))))....)))))))-----.))))..)))))......-.... ( -20.90)
>DroAna_CAF1 21315 92 + 1
AAAAUCAACAUGCAACAGCGAAAACAACAACGACAACAAAAGCCAGCAACAAAUGUCAGUUAUUUUCAUUUUGCU-----UUUGGCUGUGACU------CUAU
..............(((((.....(......)....(((((((.......(((((.....))))).......)))-----)))))))))....------.... ( -13.04)
>consensus
AAAAUCAACAUGCAACAGCGAAAACG____________AGCAGCGGCAACAAAUGUCAGUUAUUUUCAUGUUGCUCUCAUUUUGCCCUCGCCACCCAU_CUCC
............................................(((((((((((.....)))))....))))))............................ ( -4.62 =  -4.78 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:06 2006