Locus 6631

Sequence ID 3L_DroMel_CAF1
Location 17,645,899 – 17,646,002
Length 103
Max. P 0.529361
window10787

overview

Window 7

Location 17,645,899 – 17,646,002
Length 103
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 79.13
Mean single sequence MFE -34.70
Consensus MFE -20.85
Energy contribution -20.97
Covariance contribution 0.11
Combinations/Pair 1.14
Mean z-score -1.49
Structure conservation index 0.60
SVM decision value -0.01
SVM RNA-class probability 0.529361
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17645899 103 + 23771897
AAGCCGCCUU------GGCAGU----GGCCGCU--GGCCUGACAAGUUGCUUAAUUGAAAAGUGUUUUGUUUGGCAUG---CCUAAGGCAAGGCCAUACACUUGUACACUGAGAAAAA
..(((.....------))).((----((((...--.(((.((((((..((((.......))))..)))))).))).((---((...)))).))))))..................... ( -31.70)
>DroPse_CAF1 18846 113 + 1
AGGACGCCUUGCCACUGGCAUU----GGCCGAUCCAGGCUGACAAGUUGCUUAAUUGAAAAGUGUUUUGUUUGGCAUGGGCCUUGAGGCAGGGCCAG-CGGGAGCAGAUUGCCGGAGG
...........((.((((((.(----((((...(((.((..(((((..((((.......))))..)))).)..)).)))(((....)))..)))))(-(....))....)))))).)) ( -41.50)
>DroSim_CAF1 22442 103 + 1
AAGCCGCCUU------GGCAGU----GGCCGCU--GGCCUGACAAGUUGCUUAAUUGAAAAGUGUUUUGUUUGGCAUG---CCUAAGGCAAGGCCAUACACUUGUACACUAAGAAAAA
..(((.....------))).((----((((...--.(((.((((((..((((.......))))..)))))).))).((---((...)))).))))))...((((.....))))..... ( -32.00)
>DroEre_CAF1 18867 103 + 1
CAGCCGCCUU------GGCAGU----GGCCGCU--GGCCUGACAAGUUGCUUAAUUGAAAAGUGUUUUGUUUGGCAUG---CCUAAGGCAAGGGCAUACACUUGUGCACUGGCAAAAA
..((((((((------((((((----....)))--)(((.((((((..((((.......))))..)))))).)))...---.))))))).((.(((((....))))).)))))..... ( -37.70)
>DroYak_CAF1 3440 103 + 1
CAGCCGCCUU------GGCAGU----GGCCGCU--GGCCUGACAAGUUGCUUAAUUGAAAAGUGUUUUGUUUGGCAUG---CCUAAGGCAAGGCCAUACACUGGUACACUGACAGAAA
..(((((...------.)).((----((((...--.(((.((((((..((((.......))))..)))))).))).((---((...)))).)))))).....)))............. ( -33.70)
>DroAna_CAF1 17967 100 + 1
CAGCAGCUUU------GGCAGUUCUCGGCCGCUU-CGGCUGACAAGUUGCUUAAUUGAAAAGUGUUUUGUUUGGCAUG---CCACGGGCAAGGCCGGAUCUCCGGAUUCU--------
.....(((((------((((.......(((((..-..)).((((((..((((.......))))..)))))).))).))---))).))))....((((....)))).....-------- ( -31.60)
>consensus
AAGCCGCCUU______GGCAGU____GGCCGCU__GGCCUGACAAGUUGCUUAAUUGAAAAGUGUUUUGUUUGGCAUG___CCUAAGGCAAGGCCAUACACUUGUACACUGACAAAAA
.....(((((......(((........)))......(((.((((((..((((.......))))..)))))).))).........)))))............................. (-20.85 = -20.97 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:05 2006