| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,645,136 – 17,645,228 |
| Length | 92 |
| Max. P | 0.593669 |
| Location | 17,645,136 – 17,645,228 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.14 |
| Mean single sequence MFE | -28.42 |
| Consensus MFE | -14.36 |
| Energy contribution | -13.95 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17645136 92 - 23771897 ---------AUGCCUGCAGGGUAU-------GGUCCUUAAAAACGUGGAAAGGACGAAAAGAAAUGCCUGGCAUACUUUUCGGCGCAAGCAUAUUUACGUUGCAUGUA------------ ---------.(((.(((((.(((.-------.((((((...........))))))((((((..((((...)))).)))))).((....)).....))).))))).)))------------ ( -28.30) >DroPse_CAF1 18053 102 - 1 ---------GGGCCUCCAGGGUAU-------GGCCC-AAAAAAUGUGAAAAGGACGAA-AGAAAUGCCUGGCAUACUUUUCGGCACAAGCAUAUUUACGUUGCAUGUACGAGUGCGAGUA ---------(((((.(....)...-------)))))-...(((((((.......((((-((..((((...))))..)))))).......)))))))((.((((((......)))))))). ( -29.64) >DroEre_CAF1 18102 99 - 1 ---------AUGCCUGCAGGGUAUAGGGCUUGGUCCUUAAAAACGUGGAAAGGACGAAAAGAAAUGCCUGGCAUACUUUUCGGCGCAAGCAUAUUUACGUUGCAUGUA------------ ---------.(((.(((((.(((....(((((((((((...........))))))((((((..((((...)))).))))))....))))).....))).))))).)))------------ ( -31.90) >DroWil_CAF1 38654 93 - 1 ---------AUGCCUUUGGGGCACAAAG---GGUAUCAAAAAAUGUAAAACGUACGAA---AAAUUCCUGGCAUACUUUUCGGCGCAAGCAUAUUUACGUUGCAUGUA------------ ---------...((((((.....)))))---)..........(((((..(((((((((---((.............))))))((....)).....))))))))))...------------ ( -22.42) >DroAna_CAF1 17329 99 - 1 CGCAGGCAGACGUCUGCAGGGUAU--------GUCCUUAA-AACGUGGCAAGGACCAAACGAAAUGCCAGGCAUACUUUUCGGCGCAAGCAUAUUUACGUUGCAUGUA------------ .((((((....))))))((((...--------..))))..-.(((((.(((.(......((((((((...))))....))))((....)).......).)))))))).------------ ( -28.60) >DroPer_CAF1 16356 102 - 1 ---------GGGCCUCCAGGGUAU-------GGCCC-AAAAAAUGUGAAAAGGACGAA-AGAAAUGCCUGGCAUACUUUUCGGCACAAGCAUAUUUACGUUGCAUGUACGAGUGCGAGUA ---------(((((.(....)...-------)))))-...(((((((.......((((-((..((((...))))..)))))).......)))))))((.((((((......)))))))). ( -29.64) >consensus _________AUGCCUGCAGGGUAU_______GGUCCUAAAAAACGUGAAAAGGACGAA_AGAAAUGCCUGGCAUACUUUUCGGCGCAAGCAUAUUUACGUUGCAUGUA____________ ...........(((.....)))...................((((((((.....((((.....((((...))))....))))((....))...))))))))................... (-14.36 = -13.95 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:04 2006