Locus 6629

Sequence ID 3L_DroMel_CAF1
Location 17,643,852 – 17,643,954
Length 102
Max. P 0.598645
window10785

overview

Window 5

Location 17,643,852 – 17,643,954
Length 102
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 92.12
Mean single sequence MFE -26.12
Consensus MFE -21.28
Energy contribution -21.67
Covariance contribution 0.39
Combinations/Pair 1.10
Mean z-score -2.06
Structure conservation index 0.81
SVM decision value 0.13
SVM RNA-class probability 0.598645
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17643852 102 - 23771897
GUUUUGCAUAAAAUUUGCAUUUAUUUGUGGGAGACAAUCUGCGAAAUUGAAAGCAGAUGUCUCAAAGCGAAC-AAACCAGCCAAAACAGA-----AGCCACACCAGCG
(((.((((.......))))......(((((((((((.(((((..........)))))))))))...((....-......)).........-----..)))))..))). ( -26.00)
>DroSec_CAF1 20671 102 - 1
GUUUUGCAUAAAAUUUGCAUUUAUUUGUGCGAGACAAUCUGCGAAAUUGAAAGCAGAUGUCUCAAAGCGAGC-AAACCAGCCAAAACAGA-----AGCCACACCAGCG
(((((((.........((((......))))((((((.(((((..........)))))))))))...))(.((-......))))))))...-----.((.......)). ( -26.50)
>DroSim_CAF1 20163 102 - 1
GUUUUGCAUAAAAUUUGCAUUUAUUUGUGCGAGACAAUCUGCGAAAUUGAAAGCAGAUGUCUCAAAGCGAGC-AAACCAGCCAAAACAGA-----AGCCACACCAGCG
(((((((.........((((......))))((((((.(((((..........)))))))))))...))(.((-......))))))))...-----.((.......)). ( -26.50)
>DroEre_CAF1 16857 102 - 1
GUUUUGCAUAAAAUUUGCAUUUAUUUGUGCGAGACAAUCUGCGAAAUUGAAAGCAGAUGUCUCAAAGCGAGC-UAACCAGCCAAAACAGA-----AGCCACACCAGCG
(((((((.........((((......))))((((((.(((((..........)))))))))))...))(.((-(....)))))))))...-----.((.......)). ( -27.20)
>DroYak_CAF1 1413 102 - 1
GUUUUGCAUAAAAUUUGCAUUUAUUUGUGCGGGACAAUCUGCGAAAUUGAAAGCAGAUGUCUCAAAGCGAGC-UAACCAGCCAAAACAGA-----AGCCACACCAGCG
(((((((.........((((......))))((((((.(((((..........)))))))))))...))(.((-(....)))))))))...-----.((.......)). ( -26.30)
>DroAna_CAF1 16412 108 - 1
GUUUUGCAUAAAAUUUGCAUUUAUUUGUGCAAGACAAUCUACGAAAUUGAAAGCAGAUGUCUCUGAGCCAGCCAGACCACUCCGAACGGAUGGCCAACCACAGCAGCA
((((((((((((...........)))))))))))).................((...(((.((((.(....)))))(((.(((....))))))......)))...)). ( -24.20)
>consensus
GUUUUGCAUAAAAUUUGCAUUUAUUUGUGCGAGACAAUCUGCGAAAUUGAAAGCAGAUGUCUCAAAGCGAGC_AAACCAGCCAAAACAGA_____AGCCACACCAGCG
((((((..........((((......))))((((((.(((((..........)))))))))))..................))))))..................... (-21.28 = -21.67 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:03 2006