Locus 6627

Sequence ID 3L_DroMel_CAF1
Location 17,623,986 – 17,624,092
Length 106
Max. P 0.708487
window10782

overview

Window 2

Location 17,623,986 – 17,624,092
Length 106
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 80.99
Mean single sequence MFE -14.08
Consensus MFE -8.77
Energy contribution -9.28
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 0.62
SVM decision value 0.37
SVM RNA-class probability 0.708487
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17623986 106 + 23771897
ACCUCCGAUAUCUGCUCUCCCACGCAAUCUGCCGUUUU------CUUUCUCUCUAAUCUAAACUCUCUCUCUCACUGAGAAAACAAAUCGGAUUUUUUUUUCAAAUGAGAUC
...((((((...(((........))).......(((((------(((.............................))))))))..))))))......((((....)))).. ( -16.05)
>DroSim_CAF1 3104 102 + 1
ACCUCCGAUAUCUGCUCUCCCACGCAAACUGCCGUUUU------G-CUCUCUCUAAUCUAAACUCUCUCUCUCACUGAGAAAACAAAUCGUAAU---UUUUCAAAUGAGAUC
.......................(((((.......)))------)-)......................(((((.(((((((((.....))..)---))))))..))))).. ( -11.00)
>DroEre_CAF1 4144 109 + 1
ACCUCCGAUAUCUGCUCUCCCACGCAAAUAGACGUUUUUGAUUUUUCUCUCUCUACUCUAAACUCUCUCUC-AACAGAGAAAACAAAUCGGAUUC--CUUUCAAAUAAGAUA
...((((((...(((........)))..((((.((....((........))...))))))...(((((...-...)))))......))))))...--............... ( -15.10)
>DroYak_CAF1 5594 95 + 1
ACCACCGAUAUCCGCUCUCCCACGCAAACUGCCGUUUU------UUCUCUCUCU--------CUCUCUAUC-AACAGAGAAAACAAAUCGGAUUC--CUUUUAAAAAAGAUA
....(((((....((........))........(((((------((((......--------.........-...)))))))))..)))))....--............... ( -14.17)
>consensus
ACCUCCGAUAUCUGCUCUCCCACGCAAACUGCCGUUUU______UUCUCUCUCUAAUCUAAACUCUCUCUC_AACAGAGAAAACAAAUCGGAUUC__CUUUCAAAUAAGAUA
...((((((....((........))......................................((((.........))))......)))))).................... ( -8.77 =  -9.28 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:00 2006