Locus 6626

Sequence ID 3L_DroMel_CAF1
Location 17,622,707 – 17,622,818
Length 111
Max. P 0.575376
window10781

overview

Window 1

Location 17,622,707 – 17,622,818
Length 111
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 86.26
Mean single sequence MFE -24.36
Consensus MFE -19.85
Energy contribution -20.54
Covariance contribution 0.69
Combinations/Pair 1.07
Mean z-score -1.46
Structure conservation index 0.81
SVM decision value 0.08
SVM RNA-class probability 0.575376
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17622707 111 - 23771897
GCUAUAUUUGCUAGAACGUCAAUGUUUUAGUAAUAACCCUUUUAAUAGUACUUAAUUGGGAGACGACAUCCUAAUUGAAUACACAUACAUAGGUGAGAAUGGCUUACUUCU------
(((((..(((((((((((....)))))))))))...((((.......(((.((((((((((.......)))))))))).)))........))).)...)))))........------ ( -27.96)
>DroSec_CAF1 4066 113 - 1
GCUAUAUAUGCUAGAACGUCAAUGUUUUAGUAAUUACCCUUUUAAUAGUACUUAAUUGGGAGACGACAUCCAAAUUGAAUACCCAUACUCAGGUGAGAAUGGCUUACAUCUCC----
(((((...((((((((((....)))))))))).(((((.........(((.((((((.(((.......))).)))))).))).........)))))..)))))..........---- ( -25.37)
>DroEre_CAF1 2655 106 - 1
GCCAUAUUUGCCAGAACGUCAAUGGUUUAGUAAUUACCCUUUUAAUAGUACU-AAUUGGGAGACGACAUCCAAAUUGAAUACACAA----AGGU--GAAUGGCUUACCUUUCU----
(((((..(..((....((((..(((((....)))))(((..(((.......)-))..))).)))).........(((......)))----.)).--.))))))..........---- ( -21.20)
>DroYak_CAF1 4077 111 - 1
GCUAUAUCUGCUAGAACGUCAAUGGUUUAGUAAUUACCCUUUUAAUAGUACUUAAUUGGGAGACGAGAUCCAAAUUAAAUACGCAA----AGGU--GAAUGGCUUACCUUUCUGGUU
.........(((((((.......(((..(((.(((..(((((.....(((.((((((.(((.......))).)))))).)))..))----))).--.))).))).))).))))))). ( -22.90)
>consensus
GCUAUAUUUGCUAGAACGUCAAUGGUUUAGUAAUUACCCUUUUAAUAGUACUUAAUUGGGAGACGACAUCCAAAUUGAAUACACAA____AGGU__GAAUGGCUUACCUCUCU____
(((((...((((((((((....)))))))))).....(((.......(((.((((((.(((.......))).)))))).)))........))).....))))).............. (-19.85 = -20.54 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:59 2006