| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,622,424 – 17,622,516 |
| Length | 92 |
| Max. P | 0.590096 |
| Location | 17,622,424 – 17,622,516 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 82.71 |
| Mean single sequence MFE | -29.50 |
| Consensus MFE | -17.17 |
| Energy contribution | -17.93 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.590096 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17622424 92 - 23771897 G---GCACGUGCCCAAAGUGCGUA------CAUUUAGGGGUACAUUGUCCCUGUAUAUACAUUUGUACUGUACAUAUAUCCGUACGAUGGGGUCUGCGUGU .---((((((((((...((.((((------(.....((((........))))((((((((....))).)))))........))))))).))))..)))))) ( -30.90) >DroSec_CAF1 3774 95 - 1 GGCGGCACGUGCCCAAAGUGCGUA------CAUUUGGGGGUACAUUGUCCCUGGAUAUACAUUUGUACUGUACAUAUAUCCGUACGAUGGGGUCUGCGUGU ....((((((((((...((.((((------(.....((((........))))(((((((....((((...)))))))))))))))))).))))..)))))) ( -33.40) >DroEre_CAF1 2361 97 - 1 G---GCACGUGCCCAAAGUGCGUACAUUUACAUUUAGAGGUACACUGUCCCUGUAUAUACAUUUGAAUUGUACACAUAUCCGUACGAUGG-GUCUGCGUGU .---(((((((((((..((((((((.((((....)))).))))........((((((...........)))))).......))))..)))-))..)))))) ( -28.10) >DroYak_CAF1 3781 84 - 1 G---GCACGUGCCCCAAGUGCGUAAAUUUACAUUUAGAGGUACAUUGUCCCUGUGUAUACAUUU-------------AUCCGUACGAUGG-GUCUGCGUGU .---((((((((((...((((((((((.(((((..((.((........)))))))))...))))-------------)..)))))...))-))..)))))) ( -25.60) >consensus G___GCACGUGCCCAAAGUGCGUA______CAUUUAGAGGUACAUUGUCCCUGUAUAUACAUUUGUACUGUACAUAUAUCCGUACGAUGG_GUCUGCGUGU ....(((((((((((..(((((..............((((........))))(......)....................)))))..))).))..)))))) (-17.17 = -17.93 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:58 2006