Locus 6623

Sequence ID 3L_DroMel_CAF1
Location 17,620,033 – 17,620,139
Length 106
Max. P 0.555295
window10778

overview

Window 8

Location 17,620,033 – 17,620,139
Length 106
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 80.09
Mean single sequence MFE -33.23
Consensus MFE -24.43
Energy contribution -24.35
Covariance contribution -0.08
Combinations/Pair 1.34
Mean z-score -1.11
Structure conservation index 0.74
SVM decision value 0.04
SVM RNA-class probability 0.555295
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17620033 106 + 23771897
-------CCUACAGUGCCAGCAAAUUCAAGCCGAAUUGACGGCCGCCGACUGCCGGGCGUUGGGUUUUAUUAAGGCCCAGUUAAUGUGUUCCAGUUGCGAAAAACUGGAUGAU
-------..((((..(((.(((.......((((......)))).......)))..))).((((((((.....))))))))....)))).(((((((......))))))).... ( -32.24)
>DroPse_CAF1 8584 113 + 1
CUACCCUAUUUCAGUGCCAGCAAACCCAUGCCGAAUUCACGGCCGCCGACUGUCGGGAGCUGGGCUUCAUUAAGGCCCAGUUAAUGUGCUCCAGUUGCGACAAACUGGAUGAC
..........(((...((((.........((((......))))(((.(((((.((..((((((((((.....))))))))))..)).....)))))))).....)))).))). ( -37.60)
>DroEre_CAF1 1 102 + 1
-----------CAGUGCCAGCAAAUCCAAGCCGAACUGACGGCCGCAGACUGCCGGGCGUUGGGUUUCAUAAAGGCCCAGCUAAUGUGCUCCAGUUGCGACAAACUGGAUGAU
-----------....(((.(((.......((((......)))).......)))..)))(((((((((.....)))))))))........(((((((......))))))).... ( -34.24)
>DroWil_CAF1 1 104 + 1
---------UACAGUACCAACAAAUCCAUGCAGAGUUCACAGCCGCCGAUUGCCGAGAACUCGGUUUCAUUAAGGCCCAAUUAAUCUGCUCCAGCUGUGAUAAACUCGAUGAU
---------.................(((...(((((((((((....((..(((((....))))).)).....((..((.......))..)).)))))))...)))).))).. ( -24.30)
>DroAna_CAF1 1 102 + 1
-----------CAGUGCCAGCAAAUUCGCGCCGAGCUGACGGCCGCCGACUGCCGGGAACUGGGAUUCAUCAAAGCCCAGUUGAUGUGCUCCAGUUGUGAUAAGUUGGAUGAC
-----------((...(((((....((((.(((.((.(.(((...))).).))))).((((((..(.((((((.......)))))).)..))))))))))...))))).)).. ( -34.10)
>DroPer_CAF1 1 99 + 1
--------------UGCCAGCAAACCCAUGCCGAAUUCACGGCCGCCGACUGUCGGGAGCUGGGCUUCAUUAAGGCCCAGUUAAUGUGCUCCAGUUGCGACAAACUGGAUGAC
--------------.....(((..(((..((((......))))....(.....))))((((((((((.....))))))))))....)))(((((((......))))))).... ( -36.90)
>consensus
___________CAGUGCCAGCAAAUCCAUGCCGAAUUCACGGCCGCCGACUGCCGGGAGCUGGGUUUCAUUAAGGCCCAGUUAAUGUGCUCCAGUUGCGACAAACUGGAUGAC
................((((.........((((......))))(((.(((((..(((((((((((((.....))))))))))......))))))))))).....))))..... (-24.43 = -24.35 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:56 2006