Locus 6622

Sequence ID 3L_DroMel_CAF1
Location 17,617,593 – 17,617,734
Length 141
Max. P 0.976935
window10776 window10777

overview

Window 6

Location 17,617,593 – 17,617,697
Length 104
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 83.10
Mean single sequence MFE -24.15
Consensus MFE -15.99
Energy contribution -15.74
Covariance contribution -0.25
Combinations/Pair 1.15
Mean z-score -1.79
Structure conservation index 0.66
SVM decision value 0.29
SVM RNA-class probability 0.670987
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17617593 104 - 23771897
CUAGCAUCCACUUGCUUUCCGCACCUGUGGAUGGUAUUUGUCACCUUAUCAAUAC-----GGUUUCUCUGUGUUGACUGUGAUUUU-AGAUAUUCCUGCGCACGAAA-AAA
....(((((((.(((.....)))...)))))))(((((((((((....(((((((-----((.....)))))))))..)))))...-))))))..............-... ( -28.60)
>DroSec_CAF1 29893 103 - 1
CUAGCAUCCACAUGCUUUCCGCACCUGUGGAUGGUAUUCGUCACCUUAUCAAUAC-----GAUUUCUCCUUGUUGACUUU-AUUUU-AGAUAUUCCUGCGCACGAAA-AAA
.((.(((((((((((.....)))..)))))))).))((((((......((((((.-----(.......).))))))....-....(-((......))).).))))).-... ( -21.80)
>DroEre_CAF1 31414 106 - 1
UUAGCAUCCACUAGCGUUCCGCACAUGUGGAUGGUAUUCGUCACCUUAUCAAUACUGUUUGCUUUCUCUGUGUUGAAUU----UUU-AAAUAUUUCUGUGCACGGAAAACA
.((.(((((((..(((...)))....))))))).))............(((((((..............)))))))...----...-.....((((((....))))))... ( -23.94)
>DroYak_CAF1 31793 107 - 1
CUAGCAUCCACUUACUUUCCGCACCUGUGGAUGGUAUUCGUCACCUUAUCAAUACUGUUAGGUUUCUCUGUGUUGAUUU----UUAGAUAUAUUUUUGGGCACGAAACAAA
.((.(((((((...............))))))).))(((((..((..((((((((..............))))))))..----..............))..)))))..... ( -22.27)
>consensus
CUAGCAUCCACUUGCUUUCCGCACCUGUGGAUGGUAUUCGUCACCUUAUCAAUAC_____GGUUUCUCUGUGUUGACUU____UUU_AGAUAUUCCUGCGCACGAAA_AAA
.((.(((((((.(((.....)))...))))))).))((((((......(((((((..............)))))))............(.........)).)))))..... (-15.99 = -15.74 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 17,617,631 – 17,617,734
Length 103
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 74.94
Mean single sequence MFE -23.32
Consensus MFE -12.23
Energy contribution -12.20
Covariance contribution -0.03
Combinations/Pair 1.38
Mean z-score -2.35
Structure conservation index 0.52
SVM decision value 1.78
SVM RNA-class probability 0.976935
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17617631 103 - 23771897
CACAUCUGACUCAUC---CACAGGUAACUGUAAUUACUGCCUAGCAUCCACU----UGCUUUCCGCACCUGUGGAUGGUAUUUGU-CACCUUAUCAAUAC-----GGUUUCUCUGU
......(((((((((---(((((((....((....)).((..((((......----))))....)))))))))))))).....))-))..........((-----((.....)))) ( -27.60)
>DroSec_CAF1 29930 103 - 1
CACAUCUGACUCAUC---CACAGGUAACUGUAAUUACUGCCUAGCAUCCACA----UGCUUUCCGCACCUGUGGAUGGUAUUCGU-CACCUUAUCAAUAC-----GAUUUCUCCUU
......(((((((((---(((((((....((....)).((..(((((....)----))))....)))))))))))))).....))-))............-----........... ( -26.20)
>DroEre_CAF1 31449 108 - 1
CACUUCUGACUCAUC---CGCAGGUAACUGUAAUUACUACUUAGCAUCCACU----AGCGUUCCGCACAUGUGGAUGGUAUUCGU-CACCUUAUCAAUACUGUUUGCUUUCUCUGU
......((((.....---.((((....))))..........((.(((((((.----.(((...)))....))))))).))...))-))............................ ( -21.30)
>DroYak_CAF1 31829 108 - 1
CACAUCUGACUCAUC---CGCAGGUAACUGUAAUUACUGCCUAGCAUCCACU----UACUUUCCGCACCUGUGGAUGGUAUUCGU-CACCUUAUCAAUACUGUUAGGUUUCUCUGU
...(((((((.((((---(((((((....((((....(((...))).....)----))).......)))))))))))(((((.((-......)).))))).)))))))........ ( -26.70)
>DroAna_CAF1 29129 88 - 1
--CAUCUGAGUCACCCUACGCAGGUAACUGUAGUUACA--CUGGCA-----A----UACGGUCCACACUUGUGGAUCGCAUUCGG-CACCUUAUCUU------------UCUGC--
--...((((((........(((((((((....))))).--)).)).-----.----..((((((((....)))))))).))))))-...........------------.....-- ( -24.10)
>DroPer_CAF1 32396 106 - 1
-ACAUCUGACUCAUC---CACAGGUAACUGUAAUUAC--CCUAGCAUCCACACAUAUGAAAUCCACACUUGUGGAAGCCAUUCGCCCACUUUAUCAAUACCGUUCA----AAGCUU
-.....(((......---.((((....))))......--....((.((((((....((.....))....)))))).))...............)))..........----...... ( -14.00)
>consensus
CACAUCUGACUCAUC___CACAGGUAACUGUAAUUACUGCCUAGCAUCCACA____UGCUUUCCGCACCUGUGGAUGGUAUUCGU_CACCUUAUCAAUAC_____G_UUUCUCCGU
...................((((....)))).........................((((.(((((....))))).)))).................................... (-12.23 = -12.20 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:55 2006