| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,612,718 – 17,612,819 |
| Length | 101 |
| Max. P | 0.986078 |
| Location | 17,612,718 – 17,612,819 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.02 |
| Mean single sequence MFE | -26.28 |
| Consensus MFE | -19.23 |
| Energy contribution | -19.57 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.73 |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.986078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17612718 101 - 23771897 UUACUAUGUUUAAUCCCUUUGUAUGUAAAUCAAACGAUGCUUAUGCAUUG------CAAAGGGUGCAGAGUC-------------GCAUUAUCUGCGCCAGUUUUAUGCAAAUUCAAUAA .................((((((((.((((....((((((....))))))------.....((((((((...-------------......)))))))).))))))))))))........ ( -25.90) >DroGri_CAF1 30053 89 - 1 UAA--AUGUUUACCCCCUUUGUAUGUAAAUUAAUA------AAUGCAUUG------CAA-GGACGCAUAUCA-------------G--AAAUAUACGUCAGUUUUAUGCAAAUU-AAUAA ...--............((((((((.(((((....------..(((...)------)).-.((((.((((..-------------.--..)))).)))))))))))))))))..-..... ( -13.00) >DroEre_CAF1 26276 101 - 1 UUAAUAUGUUUACUCCCUUUGUAUGUAAAUUAAACGAUGCUUACGCAUUG------CAAAGGGUGCAGUGUC-------------GCAAGAUCUGCGCCAGUUUUAUGCAAAUUCAAUAA .................((((((((.(((((...((((((....))))))------.....(((((((.(((-------------....)))))))))))))))))))))))........ ( -30.50) >DroYak_CAF1 26728 101 - 1 AUAAUAUGUUUACUCCCUUUGUAUGUAAAUCAAACGAUGCUUACGCAUUG------CAAAGGGUGCAGAGUC-------------GCAAGAUCUGCGCCAGUUUUAUGCAAAUUCAAUAA .................((((((((.((((....((((((....))))))------.....((((((((.((-------------....)))))))))).))))))))))))........ ( -29.90) >DroAna_CAF1 24630 105 - 1 UUAAUACGUUUAAC--CCUUGUAUGUAAAUCAAACGAUGCGAAUGCAUUGCAUCUGCAAAGGGCGCAGAGUC-------------GCAAUAGCUGCGCCAGUUUUAUGCAAAUUCAAUAA ..............--..(((((((.((((.....(((((((.....))))))).......(((((((....-------------.......))))))).)))))))))))......... ( -26.00) >DroPer_CAF1 27588 114 - 1 UUAAUACGUUUAAUCCCUUUGUAUGUAAAUUAUACAAUGCAUGUGCAUUG------UAAAGGGCGCAUCGUCUAUUGUCCCCCACACAGGAGAUGCGUCAGUUUUAUGCAAAUUCAAUAA .................((((((((.(((((.((((((((....))))))------))...((((((((.(((..(((.....)))..))))))))))))))))))))))))........ ( -32.40) >consensus UUAAUAUGUUUAAUCCCUUUGUAUGUAAAUCAAACGAUGCUUAUGCAUUG______CAAAGGGCGCAGAGUC_____________GCAAGAUCUGCGCCAGUUUUAUGCAAAUUCAAUAA .................((((((((.((((....((((((....))))))...........((((((((......................)))))))).))))))))))))........ (-19.23 = -19.57 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:51 2006