Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,966,972 – 1,967,064 |
Length | 92 |
Max. P | 0.756262 |
Location | 1,966,972 – 1,967,064 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 77.28 |
Mean single sequence MFE | -28.72 |
Consensus MFE | -13.82 |
Energy contribution | -13.33 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.31 |
Mean z-score | -2.10 |
Structure conservation index | 0.48 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1966972 92 - 23771897 AAAACGGA-AACGGGGUCAAUCGAUAUUGUCCAUUU-----GGUGGCCGCCA---------------GUUGGUAAUGGCUGCCAAAGGUUAAAUGCG-AAUAGAAUUCGCCCAU- ....((..-..))((((...(((.((((..((.(((-----((..((((((.---------------...)))...)))..)))))))...))))))-)...(....)))))..- ( -32.60) >DroVir_CAF1 19582 101 - 1 AAAACGGA-AUUGGGGUCAAUCGAUAUUGUCCGUUGCAACGGGCUGCCGCAACGU------------ACAUAUAAUGGCUGCCAAAGGUUAAAUGUGGAAUAGAAUUCUCGCAC- ........-.(((((((((....((((.((.((((((...((....)))))))).------------))))))..))))).))))........((((((((...)))).)))).- ( -23.30) >DroWil_CAF1 27769 110 - 1 AAAACGGAAAACGGGGUCAAUCGAUAUUGUCCAUUU-----GGUGGCCACCGCCAAUAGUAGUAGUUGUUGGUAAUGGCUGCCAAAGGUUAAAUGCGCAAUAGAAUUUUUAUACC ....((.....)).((.((((....)))).)).(((-----((..((((..((((((((......))))))))..))))..)))))(((.((((.(......).))))....))) ( -31.50) >DroMoj_CAF1 21215 101 - 1 AAAAGAGA-AUCGGGGUCAAUCGAUAUUGUCCAUUGCAGCGGACUGCCAUGGCGA------------ACAUAUAAUGGCUGCCAAAGGUUAAAUGUGAAAUAGAAUUCACACAC- .......(-(((..((.((..((.((((((((((.((((....)))).))))...------------))).))).))..))))...))))...((((((......))))))...- ( -23.30) >DroAna_CAF1 16296 92 - 1 AAAACGGA-AACGAGGUCAAUCGAUAUUGUCCAUUU-----GGUGGCCACCA---------------GUUGGUAAUGGCUGCCAAAGGUUAAAUGCG-AAUAGAAUUCGCUCAA- ....((..-..)).((.((((....)))).)).(((-----((..((((((.---------------...)))...)))..)))))........(((-(((...))))))....- ( -30.30) >DroPer_CAF1 24079 93 - 1 AAAACGGA-AACGGGGUCAAUCGAUAUUGUCCAUUU-----GGUGGCCGCCA---------------GUUGGUAAUGGCUGCCAAAGGUUAAAUGCGGAAUAGAACUCGCAUAC- ....((..-..)).((.((((....)))).)).(((-----((..((((((.---------------...)))...)))..)))))......((((((........))))))..- ( -31.30) >consensus AAAACGGA_AACGGGGUCAAUCGAUAUUGUCCAUUU_____GGUGGCCACCA_______________GUUGGUAAUGGCUGCCAAAGGUUAAAUGCG_AAUAGAAUUCGCACAC_ ..............((.((((....)))).)).........((((((((((...................)))...)))))))................................ (-13.82 = -13.33 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:55 2006