Locus 6618

Sequence ID	3L_DroMel_CAF1
Location	17,600,691 – 17,600,783
Length	92
Max. P	0.713443

overview

Window 0

Location	17,600,691 – 17,600,783
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	94.99
Mean single sequence MFE	-22.12
Consensus MFE	-19.28
Energy contribution	-18.96
Covariance contribution	-0.32
Combinations/Pair	1.21
Mean z-score	-1.33
Structure conservation index	0.87
SVM decision value	0.38
SVM RNA-class probability	0.713443
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17600691 92 - 23771897
CAAAAAUGGGAUUGACAAUUCCCGGGGAUUGGCCUAACAGUCCGUGCAUCGUUAGGCAUCGCAAUGACUUUAUUCAUUUUUGUUUUCAUUAU
((((((((((.....((((((....))))))(((((((.((......)).)))))))...............)))))))))).......... ( -23.40)
>DroSec_CAF1 13040 92 - 1
CAAAAAUGGGAUUGACAAUUCCCGGGGAUUGGCCAAACAGUCCGUGCAUCGUUAGGCAUUGCAAUGACUUUAUUCAUUUUUGUUUUCAUUAU
((((((((((.(((.((((((....))))))..)))..((((..((((..(.....)..))))..))))...)))))))))).......... ( -22.40)
>DroSim_CAF1 13099 92 - 1
UGAAAAUGGGAUUGACAAUUCCCGGGGAUUGGUCAAACAAUCCGUGCAUCGUUAGGCAUUGCAAUGACUUUAUUCAUUUUUGUUUUCAUUAU
(((((((..((.(((((((((....))))))((((..((((((...........)).))))...)))).....))).))..))))))).... ( -23.00)
>DroEre_CAF1 12697 91 - 1
CAAAAGUGGGAUUGACAAUUCCCGGGGAUUGGCC-AACAGUCCGUGCAUCGUUAGGCAUUGCAAUGACUUUAUUCAUUUUUAUUUUCAUUAU
.(((((((((((((.((((((....))))))...-..)))))).((((..(.....)..))))...........)))))))........... ( -20.30)
>DroYak_CAF1 13107 91 - 1
CAAAAAUGGGAUUGACAGUUCGCGGGGAUUGGCC-AACAGUCCGUGCAUCGUUAGGCAUUGCAAUGACUUUAUUCAUUUUUAUUUUCAUUAU
..(((((((((.(((......(((.((((((...-..)))))).)))...((((.((...))..)))).....))).)))))))))...... ( -21.50)
>consensus
CAAAAAUGGGAUUGACAAUUCCCGGGGAUUGGCC_AACAGUCCGUGCAUCGUUAGGCAUUGCAAUGACUUUAUUCAUUUUUGUUUUCAUUAU
((((((((((((((.((((((....))))))......))))))((((........))))...............)))))))).......... (-19.28 = -18.96 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:48 2006