| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,592,987 – 17,593,092 |
| Length | 105 |
| Max. P | 0.645774 |
| Location | 17,592,987 – 17,593,092 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.18 |
| Mean single sequence MFE | -23.63 |
| Consensus MFE | -16.24 |
| Energy contribution | -16.68 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17592987 105 - 23771897 GCUGUAACAUUAUAAUCACAUUUAGUUACCAUAUAGGGCCAUAGUUUCAGCACAAAGCACAAGCUGCGACACUGCAGGAAGAGCAAUGAAAUGGCCAAAAGACCA ...(((((................))))).......((((((.(((.((((...........)))).)))..(((.......))).....))))))......... ( -20.99) >DroGri_CAF1 5188 104 - 1 AUAGUUAAUGUUUAGUCAAAGUC-GUUACCAUAUACGGCCAGAGUUUUAGCACAAAGCACAAGCUGCGACACUGUAGGAAGAGCAGCGUUAUGGCCAAAAAGGCC ........(((((..((...(((-((........)))))(((.(((.((((...........)))).))).)))..))..))))).......((((.....)))) ( -23.00) >DroSec_CAF1 5446 105 - 1 GCUAUAACAUUAUAAUCACAGAUAGUUACCAUAUAGGGCCAAAGUUUCAGCACAAAACACAAGCUGCGACACUGCAGGAAGAGCAAUGAAAUGGCCAAAAGACCA .(((((..(((((........))))).....)))))(((((..(((.((((...........)))).)))..(((.......)))......)))))......... ( -19.70) >DroEre_CAF1 5057 105 - 1 GUCGUUAAAUAAGAUUCACAGAUAGUUACCAUAUAGGGCCAUAGUUUCAGCACAAAGCACAAGCUUCGACACUGCAGGAAGAGCAGUGAAAUUGCCAAAAGACCA (((((.((......)).)).................(((...((((((....(.((((....)))).)..(((((.......))))))))))))))....))).. ( -17.70) >DroYak_CAF1 5416 105 - 1 GUGGUUAAAUAAUAUUCACAAAUAGUUACCAUAUAGGGCCAUAGUUUUAGCACGAAGCACAAGCUGCGACACUGCAGGAAGAGUAGUGAAAUGGCUAAAAGGCCA (((((.((....((((....)))).)))))))....((((....(((((((.((.(((....))).)).((((((.......)))))).....))))))))))). ( -28.60) >DroMoj_CAF1 6404 104 - 1 ACAUUUCACUUAUAUUUAAACAG-CUCACCAUGUAGGGCCACAGCUUGAGCACAAAGCACAAGCUGCGACACUGCAAGAAGAGCAGCGUUAUGGCCAAUAUAGCU .....................((-((....((((..((((((((((((.((.....)).))))))).(((.((((.......)))).))).))))).)))))))) ( -31.80) >consensus GCAGUUAAAUUAUAUUCACAGAUAGUUACCAUAUAGGGCCAUAGUUUCAGCACAAAGCACAAGCUGCGACACUGCAGGAAGAGCAGUGAAAUGGCCAAAAGACCA ....................................(((((.(((((..((.....))..)))))....((((((.......))))))...)))))......... (-16.24 = -16.68 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:43 2006