| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,577,907 – 17,578,006 |
| Length | 99 |
| Max. P | 0.985262 |
| Location | 17,577,907 – 17,578,006 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 62.32 |
| Mean single sequence MFE | -15.10 |
| Consensus MFE | -9.63 |
| Energy contribution | -9.63 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.64 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17577907 99 - 23771897 CACUUCACUAUUUUAUUUCCUUUCUCAUAUAGGCACGAGUAU---------------UUAUUUAUCUAAUAAGAAACA----CCACUUAAUUUCACCAGAACUUCUGGUGAGCUAUCA ...............................(((.......(---------------(((((.....)))))).....----..........(((((((.....)))))))))).... ( -15.10) >DroEre_CAF1 23099 106 - 1 ---UUCCAACAUUUCUUCCAUUUCCCACAUGAACACGAGUAUCU-ACUUCUAUAUAUUGAGCUAA--------UAAAUGUAACCACUGAAUUCCACCAGAACUUCUGGUGAGCUAUCA ---..........................(((....((((....-))))..........((((..--------.....((....)).......((((((.....)))))))))).))) ( -12.70) >DroYak_CAF1 23990 117 - 1 UAUUUCCGAAUUUUAUUGAAUUU-CAAAAUAAACACGAGAAUCUUAAUUUUUAAUAUUUAUCUAUGUAAUCAAAAACACUAAUGAUUGAAUGCCACCAGAACUUCUGGUGAGCUAUCA (((((..((((((....))))))-..))))).....((............................((((((..........))))))...((((((((.....)))))).))..)). ( -17.50) >consensus _A_UUCCAAAUUUUAUUCCAUUUCCCAAAUAAACACGAGUAUCU_A_UU_U__AUAUUUAUCUAU_UAAU_A_AAACA_UAACCACUGAAUUCCACCAGAACUUCUGGUGAGCUAUCA .............................................................................................((((((.....))))))........ ( -9.63 = -9.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:40 2006