Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,572,007 – 17,572,098 |
Length | 91 |
Max. P | 0.500000 |
Location | 17,572,007 – 17,572,098 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 93.98 |
Mean single sequence MFE | -16.89 |
Consensus MFE | -14.71 |
Energy contribution | -14.71 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.28 |
Structure conservation index | 0.87 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17572007 91 + 23771897 -AAAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAAAAAGUCGAAU------------GCGA -.............(((.((((.(((((((((((.......(((..(((((....)))))...)))))))).)))))).))))....)------------)).. ( -17.51) >DroVir_CAF1 6911 89 + 1 --AAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAA-AAGUCGAAU------------GCGA --............(((.((((.(((((((((((.......(((..(((((....)))))...)))))))).))))))-))))....)------------)).. ( -16.31) >DroWil_CAF1 15712 92 + 1 AAAAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAAAAAGUCGAAU------------GCGA ..............(((.((((.(((((((((((.......(((..(((((....)))))...)))))))).)))))).))))....)------------)).. ( -17.51) >DroYak_CAF1 17899 91 + 1 -AAAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAAAAAGUCGAAU------------ACGA -.................((((.(((((((((((.......(((..(((((....)))))...)))))))).)))))).)))).....------------.... ( -14.71) >DroMoj_CAF1 8339 89 + 1 --AAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAA-AAGUCGAAU------------GCGA --............(((.((((.(((((((((((.......(((..(((((....)))))...)))))))).))))))-))))....)------------)).. ( -16.31) >DroAna_CAF1 8023 103 + 1 -AAAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAAAAAGUCGAAUGCGAAUGCGAAUGCGA -.............(((.((((.(((((((((((.......(((..(((((....)))))...)))))))).)))))).))))....(((....)))..))).. ( -19.01) >consensus _AAAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAAAAAGUCGAAU____________GCGA ..................((((.(((((((((((.......(((..(((((....)))))...)))))))).)))))).))))..................... (-14.71 = -14.71 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:37 2006