Locus 6610

Sequence ID 3L_DroMel_CAF1
Location 17,569,517 – 17,569,609
Length 92
Max. P 0.666041
window10758

overview

Window 8

Location 17,569,517 – 17,569,609
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 82.43
Mean single sequence MFE -20.59
Consensus MFE -14.25
Energy contribution -14.67
Covariance contribution 0.42
Combinations/Pair 1.13
Mean z-score -1.85
Structure conservation index 0.69
SVM decision value 0.28
SVM RNA-class probability 0.666041
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17569517 92 - 23771897
--AACAGCGAUCUUGAGCGGAGUGUUAAUAAUAUUUUGUUCAAUGAAAAGC--CGUGUGGUUGUUGCUAUUGUUUAUAGUUUUGUUGUGGCUUUUU
--.((((((((((((((((((((((.....))))))))))))).)).((((--...(((((....))))).))))......)))))))........ ( -22.40)
>DroSec_CAF1 5948 91 - 1
---ACAGCGAUCUUGAGCGGAGUGUUAAUAAUAUUUUGUUCAAUGAAAAGC--CGUGUGGUUGUUGCUAUUGUUUAUAGUUUUGUUGUGGCUUUUU
---.........(((((((((((((.....))))))))))))).(((((((--(..(........(((((.....))))).....)..)))))))) ( -22.12)
>DroSim_CAF1 8068 92 - 1
--AACAGCGAUCUUGAGCGGAGUGUUAAUAAUAUUUUGUUCAAUGAAAAGC--CGUGUGGUUGUUGCUAUUGUUUAUAGUUUUGUUGUGGCUUUUU
--.((((((((((((((((((((((.....))))))))))))).)).((((--...(((((....))))).))))......)))))))........ ( -22.40)
>DroEre_CAF1 14669 91 - 1
--AACAGCGAUCUUGAGCGGAGUGUUAAUAAUAUUUUGUUCAAUGAAAAGC--CGUGUGGUUGUUGCUAGUGUUUAUAGUUUUGUUGUGGCUU-UU
--.((((((((((((((((((((((.....))))))))))))).))..(((--(....))))...((((.......)))).))))))).....-.. ( -21.30)
>DroWil_CAF1 11770 92 - 1
--AACUGCGAUCUUGAGCGGAACGUUCAUAAUAUUUUGUUCAAUGAAAUAU--AAUGCUGUUGUUGCUUUGGUUGUGUUUGUUGUUGUUGCUAUUU
--....((((((..((((((((((..(((.((((((..(...)..))))))--.))).)))).)))))).)))))).................... ( -17.30)
>DroAna_CAF1 5739 81 - 1
AAAAAAGCGAUCUUGAGCGAAACGUUAAUAAUAUUUUGUUCAAUGAAAAAUAGCAUAUGGUUGUUGUUAUUGUU---------------GCUAUUU
.....(((((((((((((((((..(.....)..)))))))))).))..(((((((......)))))))....))---------------))).... ( -18.00)
>consensus
__AACAGCGAUCUUGAGCGGAGUGUUAAUAAUAUUUUGUUCAAUGAAAAGC__CGUGUGGUUGUUGCUAUUGUUUAUAGUUUUGUUGUGGCUUUUU
....((((((((.((((((((((((.....))))))))))))(((........)))..)))))))).............................. (-14.25 = -14.67 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:36 2006