Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,962,253 – 1,962,352 |
Length | 99 |
Max. P | 0.888855 |
Location | 1,962,253 – 1,962,352 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 72.07 |
Mean single sequence MFE | -23.54 |
Consensus MFE | -12.68 |
Energy contribution | -13.52 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.17 |
Mean z-score | -1.86 |
Structure conservation index | 0.54 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1962253 99 - 23771897 AACGCUCAAAACAUGGAUUUUAAACACCACCCUUUGAUAAAGUCCAUCCUUAUUGGCUUGCCAUUUUAGUUGGUUCC-----------UAGAAAUCAUUGUUUCUGGUGC ..((((..(((((..((((((....((((..((..(((.(((.(((.......))))))...)))..)).))))...-----------..))))))..)))))..)))). ( -19.70) >DroSec_CAF1 13413 96 - 1 ---GCUCAAAACAUUAACUUUAAACACCACCCGAUGAUGAAGUCCAUCAUUAUUGGCUUGCCAUGUUGGUUCUUCAC-----------UAGAAAACAUUGUUUCUGGUGC ---...........................((((((((((......))))))))))...(((.....)))....(((-----------((((((......))))))))). ( -21.50) >DroSim_CAF1 27080 89 - 1 ---GUUGGACA-----A--CUAAACAUCACCCGAUGAUGAAGUCCAUCAUUAUUGGCUUGCCAUGAUAGUUCUCCAC-----------UAGAAAACAUUGUUUCUGGUGC ---...(((.(-----(--(((..(((((.((((((((((......))))))))))..))..))).))))).)))((-----------((((((......)))))))).. ( -24.90) >DroEre_CAF1 13216 99 - 1 GAAACCAAAGACAUGAAUUUUUAACACCAGCCAGUGAUGGAGUCCAACAUUAUUGGCUUGCCAUCUUGGAAGUUUCC-----------UAGAAAAUAUUGUUUCUGGUGC ...((((.(((((...............(((((((((((........))))))))))).....(((.(((....)))-----------.)))......))))).)))).. ( -27.80) >DroYak_CAF1 13511 110 - 1 GAAACGAAAAACUUGAACUUUAAACACCGCCCGUUGAUGGUGUUCAACAUUAUUGGCUUUUCAUGUUAGAUGUUUUCUAUAUGCUUCCAAGAAAAGAUUGUUUGUGGUGC ........................((((((..((..((((((.....))))))..))(((((.((..((((((.....)))).))..)).)))))........)))))). ( -23.80) >consensus _A_GCUAAAAACAUGAACUUUAAACACCACCCGAUGAUGAAGUCCAUCAUUAUUGGCUUGCCAUGUUAGUUGUUUAC___________UAGAAAACAUUGUUUCUGGUGC ........................((((..(((((((((........))))))))).................................(((((......))))))))). (-12.68 = -13.52 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:54 2006